FC929920

Overview
NameFC929920
Unique NameFC929920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15105 contig Ccv1_Contig15105:49..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_MICAN (S-adenosylmethionine synthetase OS=Microcystis aeruginosa (strain NIES-843) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52
Identity = 113/230 (49.13%), Postives = 151/230 (65.65%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP-------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKEHVIKPV 695
            +LFTSESV EGHPDK+CDQISD ILDA L QD  S+VA E    T LV++ G IT+KA V++  +VR     IG+++ D G  +++C VLV +++QSPDI+QGV      R        ++IGAGDQG +FG+A +ETPEFMPL   LA ++  +L  VRK G   +LRPDGKTQV+V Y  E+G   PV + T+L+STQHD T+           +I +DL E V++PV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLSQDDHSRVAAEVVVNTGLVLITGEITSKAQVHFVDLVRKKIAEIGYINADNGFSSNSCTVLVALDEQSPDISQGVTAAQENRELLSNDELDKIGAGDQGIVFGFACNETPEFMPLPISLAHRIARRLAAVRKTGELSYLRPDGKTQVSVIY--EDGR--PVGIDTILVSTQHDATIGDITDNDLVQQKIKSDLWEAVVQPV 230          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52
Identity = 108/228 (47.37%), Postives = 147/228 (64.47%), Query Frame = 3
Query:   48 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            T LFTSESV+EGHPDK+ DQISDA+LDA + QDP+ +VACE   K+ +V V G ITT A  + E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +E+GAGDQG MFGYA+ ET  FMP     A +L  +   +RKNG  PWLRPD K+QVT+ Y  ENG   PV    +++STQH   ++ + +   + + +IKP++P  +LD+ T F
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALISQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELGAGDQGLMFGYASRETDVFMPAPITYAHRLVRQQALLRKNGRLPWLRPDAKSQVTLRY--ENGK--PVAADCIVLSTQHSPEISQESLREAVIDEIIKPIMPPHWLDKHTRF 224          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ACTSZ (S-adenosylmethionine synthetase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52
Identity = 111/228 (48.68%), Postives = 149/228 (65.35%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKT 725
            M T LFTSESV+EGHPDK+ DQISDA+LD  L+QDP ++VACET  KT + +V G ITT A V+ E + R    +IG+   D+G D  +C VL  I +QS DI QGV     + P + GAGDQG MFGYAT+ET  FMP     A +L  +  +VRK+GT  WLRPD K+Q+T +Y +       V +  V++STQH E+V+  E+   + E +IKPV+P ++LD+ T
Sbjct:    1 MSTHLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDMGFDGHSCAVLNAIGKQSQDINQGVD---RENPLDQGAGDQGIMFGYATNETEVFMPAPITYAHRLMERQAKVRKDGTLDWLRPDAKSQLTFKYEDNK----IVGIDAVVLSTQHAESVSQKEVHEGVMEEIIKPVLPAKWLDKDT 221          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_ACIAC (S-adenosylmethionine synthetase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=metK PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.247e-52
Identity = 116/229 (50.66%), Postives = 151/229 (65.94%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQH--DETVTNDEIAAD----LKEHVIKPVIP*EYLDE 719
            FLFTSESV+EGHPDK+ DQISDAILDA   +DP S+VA ET T T LV++ G ITT A+V+Y ++ RDT + IG+ + D G+D   C VLV  ++QS DIAQGV  H S      GAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y +      P  + TV++STQH  D++ T   + A     + E +IKPV+P E+L E
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFREDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRYVDGK----PHSIDTVVLSTQHHPDQSETATRMKASFIEAVIEEIIKPVLPKEWLQE 228          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_PROM0 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9301) GN=metK PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 116/227 (51.10%), Postives = 155/227 (68.28%), Query Frame = 3
Query:   42 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDV-GLDADNCKVLVYIEQQSPDIAQGVHGH---LSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD---ETVTN-DEIAADLKEHVIKPVI 698
            M  F+FTSESV EGHPDK+CDQISDA+LDA L +DP+S+VACET   T L ++ G IT+KA V+Y K+VR+  + IG+      G DA++C VLV +++QSPDI+QGV+          +  GAGDQG MFGYA DETPE MPL   LA +L  +L +VR      +L PDGKTQV+++Y  E G  +PV ++T+LISTQH+   + VTN +EI   +KE + K V+
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYRAGGFDANSCAVLVALDEQSPDISQGVNDADDINDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHEEVLNYLLPDGKTQVSIDY--EKG--LPVSINTILISTQHNSEIDGVTNEEEIRQRIKEDLWKNVV 223          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_MYCMS (S-adenosylmethionine synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=metK PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 107/222 (48.20%), Postives = 149/222 (67.12%), Query Frame = 3
Query:   30 LKKNMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPV 695
            + +N+E  LFTSESV+EGHPDK+CDQISDAILD  L+QD ++KVACE    TN +++ G I++ A VNYE++ RD  +  G+V D  G++A+ CK+ + IE QSPDIAQGV   LS   ++IGAGDQG MFGYAT+E+  ++PL+  +A +L    T  RK G   W RPD K+QVT++Y N N      ++ T+L+S QHD      E    +KE+++  V
Sbjct:    1 MNQNIEKRLFTSESVSEGHPDKICDQISDAILDEVLKQDKNAKVACEVFATTNYLLIGGQISSTAIVNYEQVARDVLKKNGYVDDAYGINANTCKIDIKIESQSPDIAQGV--ELSN--DQIGAGDQGIMFGYATNESKTYLPLAITIAHELVYNATSQRKKGLFKWARPDMKSQVTIDYTNINNP----KIDTILMSIQHDPNYNETEFKKYIKENIMNLV 214          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LEPIN (S-adenosylmethionine synthetase OS=Leptospira interrogans GN=metK PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 114/231 (49.35%), Postives = 149/231 (64.50%), Query Frame = 3
Query:   39 NMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            +++ F+FTSESV EGHPDK+CDQISDA+LDA LEQDP S+VACET   TNLV++ G IT+K  V+ ++I R+  R+IG+    +G DAD   V  ++  QSPDI+QGV        E+ GAGDQG MFG+A +ETPE MP+    + +L   L  +R      +LRPD K+QVTVEY +      PVR+ TV+ISTQH   VT+ +I   L E  IK VIP   L+    F
Sbjct:    2 SLKDFIFTSESVGEGHPDKVCDQISDAVLDAYLEQDPKSRVACETLVTTNLVVIAGEITSKGKVDAQEIARNVIRDIGYNDITMGFDADFAVVSAHVHAQSPDISQGVTEGEGLFKEQ-GAGDQGLMFGFAINETPELMPMPIYYSHELVKHLAGLRHGNKLKFLRPDAKSQVTVEYKDGK----PVRIDTVVISTQHSPDVTHKQIEEALIEECIKKVIPANLLNNTKYF 227          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LEPIC (S-adenosylmethionine synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=metK PE=3 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 114/231 (49.35%), Postives = 149/231 (64.50%), Query Frame = 3
Query:   39 NMETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP*EYLDEKTIF 731
            +++ F+FTSESV EGHPDK+CDQISDA+LDA LEQDP S+VACET   TNLV++ G IT+K  V+ ++I R+  R+IG+    +G DAD   V  ++  QSPDI+QGV        E+ GAGDQG MFG+A +ETPE MP+    + +L   L  +R      +LRPD K+QVTVEY +      PVR+ TV+ISTQH   VT+ +I   L E  IK VIP   L+    F
Sbjct:    2 SLKDFIFTSESVGEGHPDKVCDQISDAVLDAYLEQDPKSRVACETLVTTNLVVIAGEITSKGKVDAQEIARNVIRDIGYNDITMGFDADFAVVSAHVHAQSPDISQGVTEGEGLFKEQ-GAGDQGLMFGFAINETPELMPMPIYYSHELVKHLAGLRHGNKLKFLRPDAKSQVTVEYKDGK----PVRIDTVVISTQHSPDVTHKQIEEALIEECIKKVIPANLLNNTKYF 227          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_LEPCP (S-adenosylmethionine synthetase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=metK PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 114/230 (49.57%), Postives = 152/230 (66.09%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHD-ETVTNDEIAAD----LKEHVIKPVIP*EYLDEKT 725
            FLFTSESV+EGHPDK+ DQISDAILDA  EQDP S+VA ET T T LV++ G ITT A+V+Y ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV  H S      GAGDQG MFGYA DETPE MP     A +L  +  ++RK+G  P+LRPD K+QVT+ Y +      P  + T+++STQH  E    D++       ++E +IKPV+P E++  +T
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRYVDGK----PHSIDTIVLSTQHSPEQSLGDKMIPSFYEAIREELIKPVLPKEWITAET 229          
BLAST of FC929920 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.629e-52
Identity = 108/217 (49.77%), Postives = 141/217 (64.98%), Query Frame = 3
Query:   51 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGGITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIP 701
            + FTSESV EGHPDK+ DQISDA+LD  L QDP S+VACET   T +  + G I TK   +  ++VR T RNIG+ S ++G D   C V+  I++QS DIAQGV       PE+ GAGDQG MFG+A DETP  MP     A QL  +LT+VRK+G   +LRPDGKTQV+ EY +      PV ++ V++S+QH + V+ND I   + E VI+  +P
Sbjct:    8 YFFTSESVTEGHPDKVADQISDAVLDVLLAQDPMSRVACETLVTTGMAFIAGEIRTKGFADLPEVVRSTIRNIGYNSSEMGFDWKTCAVISSIDKQSGDIAQGVD---RGNPEDQGAGDQGMMFGFACDETPTLMPAPIYWAHQLSQRLTQVRKDGILDFLRPDGKTQVSFEYVDGK----PVHINNVVVSSQHADNVSNDTIREGIIEEVIRKTLP 217          
The following BLAST results are available for this feature:
BLAST of FC929920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_MICAN1.247e-5249.13S-adenosylmethionine synthetase OS=Microcystis aer... [more]
METK_COXBN1.247e-5247.37S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_ACTSZ1.247e-5248.68S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_ACIAC1.247e-5250.66S-adenosylmethionine synthetase OS=Acidovorax aven... [more]
METK_PROM01.629e-5251.10S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_MYCMS1.629e-5248.20S-adenosylmethionine synthetase OS=Mycoplasma myco... [more]
METK_LEPIN1.629e-5249.35S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPIC1.629e-5249.35S-adenosylmethionine synthetase OS=Leptospira inte... [more]
METK_LEPCP1.629e-5249.57S-adenosylmethionine synthetase OS=Leptothrix chol... [more]
METK_DESVM1.629e-5249.77S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]

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Properties
Property NameValue
Genbank descriptionC34001H03EF PostHarvC1 Citrus clementina cDNA clone C34001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929920 ID=FC929920; Name=FC929920; organism=Citrus clementina; type=EST; length=733bp
GAATTCTAGATCTACCCGGTTCGCAGTTTTTGAAGAAAAATATGGAGACT
TTTTTGTTCACTTCAGAATCTGTGAACGAGGGTCATCCAGACAAGCTCTG
TGATCAGATCTCCGATGCCATTCTCGATGCTTGTCTCGAACAAGACCCAG
ATAGCAAGGTGGCTTGTGAAACCTGTACCAAGACTAACTTGGTTATGGTT
TTTGGAGGGATCACAACCAAAGCTAATGTTAATTACGAGAAAATTGTTCG
TGACACTTGCCGCAACATTGGATTTGTCTCTGATGATGTGGGTTTGGATG
CTGATAACTGTAAGGTTTTGGTTTACATTGAGCAACAAAGCCCTGATATC
GCCCAGGGCGTTCATGGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGC
TGGTGATCAGGGGCATATGTTTGGTTATGCTACCGATGAGACTCCTGAAT
TTATGCCTCTGAGTCATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACC
GAGGTTCGAAAGAATGGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGAC
ACAAGTTACTGTTGAGTATTACAATGAGAATGGTGCTATGGTTCCTGTGA
GAGTTCACACAGTTTTGATCTCTACTCAGCATGACGAAACTGTGACTAAT
GATGAGATCGCTGCTGATTTGAAAGAGCATGTGATCAAGCCTGTTATTCC
CTGAGAGTACCTTGATGAGAAGACTATCTTCCA
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