FC929923

Overview
NameFC929923
Unique NameFC929923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 50/195 (25.64%), Postives = 94/195 (48.21%), Query Frame = 2
Query:  104 INSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPT--VAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            I+S+ F      L +AS D +++++     K  +T    K G   + ++   S +ICS      S  ++++   +   ++++  KGHKE V  +  +P ++  +SGS D +VRIWD+    C  ++     P   V F++ G +       G ++++D+ +   G     +   D  EV  +KFS +GK +L  T
Sbjct:   49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQD-SKLICSA-----SDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTT---GQLLNTISTEDGKEVSFVKFSPNGKFVLAGT 234          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 49/195 (25.13%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  104 INSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            ++S+ F    + L ++S D  ++++     K  KT    K G   V ++   + ++ +      S  ++L+   +   + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T
Sbjct:   48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA------SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 49/195 (25.13%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  104 INSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            ++S+ F    + L ++S D  ++++     K  KT    K G   V ++   + ++ +      S  ++L+   +   + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T
Sbjct:   48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA------SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 49/195 (25.13%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  104 INSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            ++S+ F    + L ++S D  ++++     K  KT    K G   V ++   + ++ +      S  ++L+   +   + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T
Sbjct:   48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA------SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 49/195 (25.13%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  104 INSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            ++S+ F    + L ++S D  ++++     K  KT    K G   V ++   + ++ +      S  ++L+   +   + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T
Sbjct:   48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA------SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233          
BLAST of FC929923 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 49/195 (25.13%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  104 INSLDFHRKDDLLVTASDDDSVRLYDIVGAKLIKTTYHKKHGADCVCFTHHPSSVICSTKYNLDSTGESLRYLSMYDNRILRYFKGHKERVISLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRP--TVAFDQQGLVFAVAMEAGAIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTT 682
            ++S+ F    + L ++S D  ++++     K  KT    K G   V ++   + ++ +      S  ++L+   +   + L+  KGH   V     +P ++  +SGS D SVRIWD++   C   L     P   V F++ G +   +   G  +++D+ S   G     L+  D   V  +KFS +GK +L  T
Sbjct:   48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA------SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233          
The following BLAST results are available for this feature:
BLAST of FC929923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
WDR5_DICDI3.102e-1325.64WD repeat-containing protein 5 homolog OS=Dictyost... [more]
WDR5_XENTR3.791e-1125.13WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT3.791e-1125.13WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE3.791e-1125.13WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN3.791e-1125.13WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN3.791e-1125.13WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]

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Properties
Property NameValue
Genbank descriptionC34001H06EF PostHarvC1 Citrus clementina cDNA clone C34001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929923 ID=FC929923; Name=FC929923; organism=Citrus clementina; type=EST; length=702bp
GACAAGTGAAACATCAATGGCGACGACGTCGCTCGCAGAACTCGATGATG
AAACGGTGCGCAGCATGGCAATGGCTGCAATTTTCTCAGACTTTGGTGGG
AAGATAAATTCACTTGACTTTCATCGAAAAGACGATTTATTGGTGACGGC
TAGTGACGATGACTCTGTGCGACTTTATGATATTGTCGGTGCTAAGTTGA
TCAAGACCACGTACCACAAGAAACATGGTGCTGATTGTGTTTGCTTTACC
CATCACCCAAGCTCTGTTATTTGCTCGACAAAATATAATCTTGATTCTAC
TGGAGAGTCTCTGCGGTATCTATCAATGTATGATAATCGAATTCTTCGCT
ACTTCAAAGGGCATAAGGAGAGGGTTATTTCTCTCTGCATGTCTCCAGTT
AATGATAGCTTTATGTCTGGTTCTCTTGACCACAGCGTTAGAATATGGGA
TCTTCGTGTTAATGCTTGCCAGGGAATTTTACGTCTGCGTGGTAGACCTA
CAGTTGCATTTGATCAACAAGGCCTTGTCTTTGCGGTGGCAATGGAAGCG
GGTGCTATCAAATTGTTTGACTCACGTTCCTACGACAAGGGTCCCTTTGA
CACATTTCTAGTAGGTGGGGATACAGCAGAGGTTTGTGATATTAAATTTA
GCAATGATGGTAAATCAATGCTCTTGACAACCACAATAACACATTTATGT
TC
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