FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_PANTR (Glutamate dehydrogenase 2, mitochondrial OS=Pan troglodytes GN=GLUD2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 110/240 (45.83%), Postives = 141/240 (58.75%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAG-------QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE    +I G       + FV+QGFGNVG  + R +   G K +AV +  G+I N  GID   L     +H  + GF      +  SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTENELEKITRRFTMELAKKGFIGPGVDVPAPDMNTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFRDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFRLQHGSLLGFPKAKPYE-GSILEIDCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_BOVIN (Glutamate dehydrogenase 1, mitochondrial OS=Bos taurus GN=GLUD1 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.087e-46
Identity = 108/240 (45.00%), Postives = 137/240 (57.08%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG--------KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + + +ELE++TR FT ++     IG   DVPAPDM TG + M+WI D Y+   GH    + A VTGKPI  GG  GR +ATGRGV    E  +NE               + FV+QGFGNVG  + R +   G K + V +  G+I N  GID   L     +H  + GF     I   SIL  DCD+LIPAA
Sbjct:  145 PCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKA-KIYEGSILEVDCDILIPAA 383          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_PYRKO (Glutamate dehydrogenase OS=Pyrococcus kodakaraensis GN=gdhA PE=1 SV=4)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 101/239 (42.26%), Postives = 140/239 (58.58%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGI-DVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVINR 700
            P KGGIR+HP      V ALA  MTWK AV ++PYGG KGGI  +P  LS  E ERL R + + ++D+IG   D+PAPD+ T P+ MAW++DEY    +  G +  V+TGKP  +GG + R  AT RG  F         G  ++ G+   IQG+GN G +  +++ E+ G K+VAVSD  G I N  G+     +LK  KEH  VK   G  +I +  +L  + D+L P+A+ GVI +
Sbjct:   67 PTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVDPKKLSEREQERLARSYIRAVYDVIGPWTDIPAPDVYTNPKIMAWMMDEYETIMRRKGPAFGVITGKPPGVGGIVARMDATARGAAFTIREAAKALGWDDLKGKTIAIQGYGNAGYYLHKIMSEEFGMKVVAVSDSKGGIYNPDGLPPADEVLKWKKEHGSVKDMPGTQNITNEELLELEVDILAPSAIEGVITK 305          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_PEPAS (NAD-specific glutamate dehydrogenase OS=Peptostreptococcus asaccharolyticus PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.398e-44
Identity = 92/238 (38.66%), Postives = 139/238 (58.40%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAV--VTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI-----SGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 694
            P KGG+R+HP V+ DEV AL+  MT+K     +PYGG KGGI  +P +LS  ELE+L+R + + ++  +G   D+PAPD+ T  Q M+W +DEY K +G    +   TGKP+  GGS GR+ ATG GV           G  +   +  +QGFGNVG++  + I  +GGK+ A+++      + A+ N  GID   LL + + ++ + GF G + I       ++ D+++PAAL  VI
Sbjct:   68 PSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENVI 305          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_CHICK (Glutamate dehydrogenase 1, mitochondrial OS=Gallus gallus GN=GLUD1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.061e-41
Identity = 103/240 (42.92%), Postives = 137/240 (57.08%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKI--HDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFATEALL-NEHGKNIAG-------QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAA 679
            P KGGIRY  +V  DEV ALA LMT+K AV ++P+GGAK G+  NP + +  +LE++TR FT ++     IG   DVPAP+M TG + M+WI D Y+   GH    + A VT   I  GG  GR +ATGRG+    E  + N    +I G       + F +QGFGNVG  + R +   G K VAV +  G+I N  GID   L  +  +H  + GF     ++  SIL  DCD+LIPAA
Sbjct:   91 PCKGGIRYSLDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTKPGISQGGIHGRISATGRGLFGHIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGEFDGSIWNPDGIDPKELEDYKLQHGTIMGFPKAQKLE-GSILETDCDILIPAA 329          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE3_RHISN (Probable glutamate dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=NGR_a01340 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.059e-37
Identity = 93/246 (37.80%), Postives = 140/246 (56.91%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIG-IHADVPAPDMGTGPQTMAWILDEYSKFHG----HSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLN-------EHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIED-CDVLIPAALGGVIN 697
            P+KG IRY    D +EV ALA LMT K ++ ++P+GG+KG +  +P   +  ELE +TR FTQ+++             D+GTG + MAW++DE+ + +      S A VTGKP+  GG  GR  +TGRGV FA ++ L        +  +N+ G   VIQGFGNVG  AAR + E+   ++  +++  G + N +G+ + +L +H      + GF G  SI  +   +E  CDVLIPAA+   I+
Sbjct:   48 PVKGDIRYASNADAEEVEALAALMTLKCSLVDVPFGGSKGALKIDPRGWTPQELEHITRRFTQEMNKRPDRARRQCVGSDIGTGEREMAWMMDEFRRANPTDVVTSGACVTGKPLSKGGIAGRAESTGRGVQFAIQSSLRDTRTPGLDGRRNLKGASTVIQGFGNVGYHAARFLSEEDDARVTVLAERDGYVANPEGLSIEALKQHQIRTGSILGFDGAKSIAGDMCGVEQPCDVLIPAAMENAIH 293          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_CORGL (NADP-specific glutamate dehydrogenase OS=Corynebacterium glutamicum GN=gdh PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 77/239 (32.22%), Postives = 124/239 (51.88%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSID------SNSILIEDCDVLIPAALGGVIN 697
            P KGG+R+HP V+   V  L     +K ++  +P GG KGG   +P   S  E+ R  + F  ++H  IG + DVPA D+G G + + ++   Y +  + H   V+TGK +  GGSL R  ATG G ++    ++   G++I+GQ+ ++ G GNV ++A     E G  ++  SD SG +    G+DV + L+ +KE R  +     D ++        SI    CD+ +P A    +N
Sbjct:   90 PYKGGLRFHPSVNLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDLEIMRFCQSFMTELHRHIGEYRDVPAGDIGVGGREIGYLFGHYRRMANQHESGVLTGKGLTWGGSLVRTEATGYGCVYFVSEMIKAKGESISGQKIIVSGSGNVATYAIEKAQELGATVIGFSDSSGWVHTPNGVDV-AKLREIKEVRRARVSVYADEVEGATYHTDGSIWDLKCDIALPCATQNELN 327          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_COREF (NADP-specific glutamate dehydrogenase OS=Corynebacterium efficiens GN=gdh PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.138e-30
Identity = 75/233 (32.19%), Postives = 123/233 (52.79%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSID------SNSILIEDCDVLIPAA 679
            P KGG+R+HP V+   V  L     +K ++  +P GG KGG   +P   S  E+ R  + F  ++H  IG + DVPA D+G G + + ++   Y +  + H   V+TGK +  GGSL R  ATG G ++  + ++   G+ + G++ ++ G GNV ++A + + E G  +V  SD SG +    G+DV + L+ +KE R  +  S  D ++        SI     D+ +P A
Sbjct:   90 PYKGGLRFHPSVNLGIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSELEIMRFCQSFMTELHRHIGEYRDVPAGDIGVGGREIGYLFGHYRRLANQHESGVLTGKGLTWGGSLVRTEATGFGTVYFVQEMIKAEGETLEGKKVIVSGSGNVATYAIQKVQELGAVVVGFSDSSGWVSTPNGVDV-AKLREIKEVRRARVSSYADEVEGAEYHTDGSIWDLTADIALPCA 321          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_PRERU (NAD(P)-specific glutamate dehydrogenase OS=Prevotella ruminicola GN=gdhA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.032e-29
Identity = 79/240 (32.92%), Postives = 125/240 (52.08%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL-----LKHVKEHRGVKGFS---GGDSIDSNSILIEDCDVLIPAALGGVIN 697
            P KGG+R+H  V+   +  LA   T+K ++  +P GGAKGG   +P   S  E+ R  + F  +++ LIG   DVPA D+G G + + ++  +Y K       ++TGK ++ GGSL R  ATG G ++  E +L   G+++ G+  ++ G GNV  +    + + G K V  SD +G I +  GID   L     LK+VK  R +K ++   G   +++     E  D+  P A    IN
Sbjct:   86 PYKGGLRFHKSVNASILKFLAFEQTFKNSLTTLPMGGAKGGSDFDPHGKSDMEVMRFCQAFMNELYRLIGPDEDVPAGDIGVGGREVGYMFGQYKKLTHQFQGILTGKGLEFGGSLIRPEATGYGNVYFLEDMLKTRGESLEGKTVLVSGSGNVAQYTIEKLLQLGAKPVTCSDSNGYIYDPDGIDAEKLAFIMELKNVKRGR-IKEYAEKYGVKYVENARPWGEKADIATPCATQDEIN 324          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_HELPJ (NADP-specific glutamate dehydrogenase OS=Helicobacter pylori J99 GN=gdhA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.613e-28
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHR 595
            P KGG+R+HP V+   +  L      K ++  +  GGAKGG   +P + S  E+ R  + F  +++  IG   DVPA D+G G + + ++  +Y K       V+TGK +  GGSL R  ATG G ++  E +L E   ++ G+   + G GNV  +    + + G K V  SD +G I +  GID+  LLK +KE R
Sbjct:   86 PYKGGLRFHPSVNESVIKFLGFEQVLKNSLTTLAMGGAKGGSDFDPKEKSEHEIMRFCQAFMNELYRHIGATTDVPAGDIGVGEREIGYLFGQYKKLVNRFEGVLTGKGLTYGGSLCRKEATGYGCVYFAEEMLQERNSSLEGKVCSVSGSGNVAIYTIEKLLQIGAKPVTASDSNGMIYDKDGIDL-ELLKEIKEAR 282          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHE4_PANTR8.087e-4645.83Glutamate dehydrogenase 2, mitochondrial OS=Pan tr... [more]
DHE3_BOVIN8.087e-4645.00Glutamate dehydrogenase 1, mitochondrial OS=Bos ta... [more]
DHE3_PYRKO1.525e-4442.26Glutamate dehydrogenase OS=Pyrococcus kodakaraensi... [more]
DHE2_PEPAS3.398e-4438.66NAD-specific glutamate dehydrogenase OS=Peptostrep... [more]
DHE3_CHICK2.061e-4142.92Glutamate dehydrogenase 1, mitochondrial OS=Gallus... [more]
DHE3_RHISN1.059e-3737.80Probable glutamate dehydrogenase OS=Rhizobium sp. ... [more]
DHE4_CORGL3.298e-3132.22NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_COREF2.138e-3032.19NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_PRERU4.032e-2932.92NAD(P)-specific glutamate dehydrogenase OS=Prevote... [more]
DHE4_HELPJ2.613e-2834.85NADP-specific glutamate dehydrogenase OS=Helicobac... [more]

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Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
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