FC929935

Overview
NameFC929935
Unique NameFC929935
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_CLOSY (NAD-specific glutamate dehydrogenase OS=Clostridium symbiosum GN=gdh PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 1.586e-25
Identity = 67/199 (33.67%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHR 595
            P KGG+R+ P V+   +  L     +K ++  +P GGAKGG   +P   S  E+ R  + F  +++  IG   DVPA D+G G + + ++  +Y K   G    V+TGK    GGSL R  ATG G ++  EA++      + G+   + GFGNV   AA+ + E G K V +S   G I + +GI     + ++ E R
Sbjct:   88 PYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 286          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_TUBBO (NADP-specific glutamate dehydrogenase OS=Tuber borchii GN=GDH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 66/182 (36.26%), Postives = 99/182 (54.40%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLN--EHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAI 538
            P KGG+R+HP V+   +  L    T+K A+  +  GG KGG   +P   S +E+ R    F +++   IG   DVPA D+G G + + ++   Y  +      V+TGK I  GGSL R  ATG G+++    +++    GK   AG+R  I G GNV  +AA  + E GGK++ +SD  GA+
Sbjct:   75 PYKGGLRFHPTVNLSILKFLGFEQTFKNALTGLNMGGGKGGSDFDPKGKSDNEIRRFCYSFMRELSKHIGQFTDVPAGDIGVGGREIGYLFGAYESYKNQFEGVLTGKGITWGGSLIRPEATGYGLVYYVAHMISYASGGKETFAGKRVAISGSGNVAQYAALKVLELGGKVITLSDSKGAL 256          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE5_YEAST (NADP-specific glutamate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=GDH3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 66/188 (35.11%), Postives = 106/188 (56.38%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLN--EHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGI 556
            P KGG+R+HP V+   +  L     +K A+  +  GG KGG+  +    S +E+ R+   F +++   IG   DVPA D+G G + + ++   Y  +      V+TGK ++ GGSL R  ATG G+++ T+A+++   +GK +  G+R  I G GNV  +AA  + E GG +V++SD  G I +  GI
Sbjct:   73 PYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGGKGGLCVDLKGKSDNEIRRICYAFMRELSRHIGKDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGFGLVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGIVVSLSDSKGCIISETGI 260          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_YEAST (NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=GDH1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLN--EHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGI 556
            P KGG+R+HP V+   +  L     +K ++  +  GG KGG+  +    S +E+ R+   F +++   IG   DVPA D+G G + + ++   Y  +      V+TGK ++ GGSL R  ATG G+++ T+A+++   +GK +  G+R  I G GNV  +AA  + E GG +V++SD  G I +  GI
Sbjct:   72 PYKGGLRFHPSVNLSILKFLGFEQIFKNSLTGLDMGGGKGGLCVDLKGRSNNEIRRICYAFMRELSRHIGQDTDVPAGDIGVGGREIGYLFGAYRSYKNSWEGVLTGKGLNWGGSLIRPEATGYGLVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQYAALKVIELGGTVVSLSDSKGCIISETGI 259          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE2_BACFR (NAD-specific glutamate dehydrogenase OS=Bacteroides fragilis GN=gdhB PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 67/185 (36.22%), Postives = 94/185 (50.81%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGI 556
            P KGGIR+H  V+   +  L    T+K A+  +P GG KGG   +P   S +E+ R  + F  ++   +G   DVPA D+G G + + ++   Y K         TGK ++ GGSL R  ATG G L+    +L   G +I G+   I GFGNV   AA    E G K+V +S   G I +  GI
Sbjct:   86 PYKGGIRFHASVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHLGPDMDVPAGDIGVGGREVGYMFGMYKKLTREFTGTFTGKGLEFGGSLIRPEATGFGGLYFVNQMLQTKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPNGI 270          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_SACBA (NADP-specific glutamate dehydrogenase 1 OS=Saccharomyces bayanus GN=GDH1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 65/188 (34.57%), Postives = 106/188 (56.38%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLN--EHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGI 556
            P KGG+R+HP V+   +  L     +K ++  +  GG KGG+  +    S +E+ R+   F +++   IG   DVPA D+G G + + ++   Y  +      V+TGK ++ GGSL R  ATG G+++ T+A+++   +GK +  G+R  I G GNV  +AA  + E GG +V++SD  G I +  GI
Sbjct:   72 PYKGGLRFHPSVNLSILKFLGFEQIFKNSLTGLDMGGGKGGLCVDLKGRSNNEIRRICYAFMRELSRHIGQDTDVPAGDIGVGGREIGYLFGAYRTYKNSWEGVLTGKGLNWGGSLIRPEATGYGLVYYTQAMIDYATNGKESFEGKRVTISGSGNVAQFAALKVIELGGTVVSLSDSKGCIISETGI 259          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_NEUSI (NADP-specific glutamate dehydrogenase OS=Neurospora sitophila GN=GDH PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 70/203 (34.48%), Postives = 104/203 (51.23%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAI--KNSKGIDVPSL--LKHVKEHR 595
            P KGG+R HP V+   +  L     +K A+  +  GG KGG   +P   S +E+ R    F  ++H  IG   DVPA D+G G + + ++   Y K       V+TGK +  GGSL R  ATG G+++    +L   G  + AG+R  + G GNV  +AA  + E G  +V++SD  GA+      GI V  +  +  +KE R
Sbjct:   76 PYKGGLRLHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGADFDPKGKSDAEIRRFCCAFMAELHKHIGADTDVPAGDIGVGGREIGYMFGAYRKAANRFEGVLTGKGLSWGGSLIRPEATGYGLVYYVGHMLEYSGAGSYAGKRVALSGSGNVAQYAALKLIELGATVVSLSDSKGALVATGESGITVEDINAIMAIKEAR 278          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_NEUIN (NADP-specific glutamate dehydrogenase OS=Neurospora intermedia GN=GDH PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 70/203 (34.48%), Postives = 104/203 (51.23%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAI--KNSKGIDVPSL--LKHVKEHR 595
            P KGG+R HP V+   +  L     +K A+  +  GG KGG   +P   S +E+ R    F  ++H  IG   DVPA D+G G + + ++   Y K       V+TGK +  GGSL R  ATG G+++    +L   G  + AG+R  + G GNV  +AA  + E G  +V++SD  GA+      GI V  +  +  +KE R
Sbjct:   76 PYKGGLRLHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGADFDPKGKSDAEIRRFCCAFMAELHKHIGADTDVPAGDIGVGGREIGYMFGAYRKAANRFEGVLTGKGLSWGGSLIRPEATGYGLVYYVGHMLEYSGAGSYAGKRVALSGSGNVAQYAALKLIELGATVVSLSDSKGALVATGESGITVEDINAVMAIKEAR 278          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_NEUCR (NADP-specific glutamate dehydrogenase OS=Neurospora crassa GN=gdh PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 70/203 (34.48%), Postives = 104/203 (51.23%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAI--KNSKGIDVPSL--LKHVKEHR 595
            P KGG+R HP V+   +  L     +K A+  +  GG KGG   +P   S +E+ R    F  ++H  IG   DVPA D+G G + + ++   Y K       V+TGK +  GGSL R  ATG G+++    +L   G  + AG+R  + G GNV  +AA  + E G  +V++SD  GA+      GI V  +  +  +KE R
Sbjct:   76 PYKGGLRLHPSVNLSILKFLGFEQIFKNALTGLSMGGGKGGADFDPKGKSDAEIRRFCCAFMAELHKHIGADTDVPAGDIGVGGREIGYMFGAYRKAANRFEGVLTGKGLSWGGSLIRPEATGYGLVYYVGHMLEYSGAGSYAGKRVALSGSGNVAQYAALKLIELGATVVSLSDSKGALVATGESGITVEDINAVMAIKEAR 278          
BLAST of FC929935 vs. ExPASy Swiss-Prot
Match: DHE4_GIALA (NADP-specific glutamate dehydrogenase OS=Giardia lamblia PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 63/202 (31.19%), Postives = 104/202 (51.49%), Query Frame = 2
Query:    2 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPGDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL--LKHVK-EHRG 598
            P KGG+R+HP V+   +  L      K ++  +P GG KGG   +P   S +E+ R  + F  ++   +G   DVPA D+G G + + ++  +Y +       V+TGK +  GGS  R  ATG G ++  E +  ++   I G+  ++ G GNV  +A   + + G K++  SD +G I +  G +   L  L ++K E RG
Sbjct:   87 PYKGGLRFHPSVNLSILKFLGFEQILKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELQRHVGADTDVPAGDIGVGAREIGYLYGQYKRLRNEFTGVLTGKNVKWGGSFIRPEATGYGAVYFLEEMCKDNNTVIRGKNVLLSGSGNVAQFACEKLIQLGAKVLTFSDSNGTIVDKDGFNEEKLAHLMYLKNEKRG 288          
The following BLAST results are available for this feature:
BLAST of FC929935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DHE2_CLOSY1.586e-2533.67NAD-specific glutamate dehydrogenase OS=Clostridiu... [more]
DHE4_TUBBO3.532e-2536.26NADP-specific glutamate dehydrogenase OS=Tuber bor... [more]
DHE5_YEAST4.613e-2535.11NADP-specific glutamate dehydrogenase 2 OS=Sacchar... [more]
DHE4_YEAST4.613e-2534.57NADP-specific glutamate dehydrogenase 1 OS=Sacchar... [more]
DHE2_BACFR6.025e-2536.22NAD-specific glutamate dehydrogenase OS=Bacteroide... [more]
DHE4_SACBA7.869e-2534.57NADP-specific glutamate dehydrogenase 1 OS=Sacchar... [more]
DHE4_NEUSI1.753e-2434.48NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_NEUIN2.290e-2434.48NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_NEUCR2.290e-2434.48NADP-specific glutamate dehydrogenase OS=Neurospor... [more]
DHE4_GIALA2.290e-2431.19NADP-specific glutamate dehydrogenase OS=Giardia l... [more]

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Properties
Property NameValue
Genbank descriptionC34002A06EF PostHarvC1 Citrus clementina cDNA clone C34002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929935 ID=FC929935; Name=FC929935; organism=Citrus clementina; type=EST; length=702bp
ACCTATGAAGGGGGGAATCAGATATCATCCTGAGGTTGACCCAGATGAGG
TTAATGCATTAGCTCAACTCATGACATGGAAGACAGCTGTAGCAAATATC
CCATATGGTGGTGCTAAAGGTGGAATAGGATGTAATCCAGGGGATTTAAG
CATATCTGAGCTAGAGAGGCTTACCAGAGTTTTTACCCAAAAGATTCATG
ATCTGATAGGAATTCATGCAGATGTTCCTGCTCCTGATATGGGGACAGGT
CCTCAGACTATGGCATGGATACTGGATGAGTATTCCAAATTTCATGGCCA
CTCGCCAGCAGTTGTAACGGGAAAACCCATTGATCTTGGCGGGTCTCTAG
GCAGAGATGCAGCTACAGGAAGAGGAGTGCTTTTTGCTACGGAGGCCCTG
CTCAATGAGCACGGGAAGAACATTGCTGGACAACGATTTGTTATACAGGG
TTTTGGAAATGTCGGTTCCTGGGCTGCTCGACTAATTGGTGAAAAAGGTG
GGAAGATTGTTGCTGTAAGTGACATCTCTGGAGCCATCAAAAACAGCAAA
GGCATTGATGTTCCAAGTCTACTTAAGCATGTAAAGGAACATCGCGGTGT
TAAAGGATTCAGTGGTGGAGATTCGATAGATTCAAATTCGATATTGATTG
AGGACTGTGACGTTCTCATCCCTGCAGCCCTTGGGGGAGTCATCAATAGG
GA
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