FC929942

Overview
NameFC929942
Unique NameFC929942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929942_ssr25 microsatellite FC929942_ssr25:25..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14439 contig Ccv1_Contig14439:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP7_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.374e-26
Identity = 58/154 (37.66%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  222 DETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            DET C +   G  +C+  CGFFGS AT NMCS+CY++     D  + AA++   +          E V  A    + + +   +     S +S  +E   AK    P+RC++C+K+VGLTGFKCRCG  +C  HR++D H C FDY++A ++ I
Sbjct:   11 DETACGSGA-GAAMCVTGCGFFGSEATNNMCSRCYREHSADNDAVEEAAAANSDL----------ELVGVAETTTKKARMSAVVPVAVASSSSAAAEQPAAKAATAPNRCAACRKKVGLTGFKCRCGGNFCGGHRHADAHGCGFDYKSAGKEQI 153          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP5_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Oryza sativa subsp. japonica GN=SAP5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = 3
Query:  261 LCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            LC NNCGFFGS AT+++CSKCY+D   ++  A +  ++  S    T  S+ S S   A +                S A+E    V A  K   SRC+SC+KRVGLTGF CRCG  +C +HRY ++H C FD++ A RDAI
Sbjct:   14 LCANNCGFFGSPATLDLCSKCYRDRQGRESTAPVVVAAAASACPATHPSSPSSSSCPAFLP--------------SSTAAEAGVVVAAVAKA--SRCASCRKRVGLTGFACRCGGTFCGAHRYPERHACGFDFKAAGRDAI 138          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP11_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 11 OS=Oryza sativa subsp. japonica GN=SAP11 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 59/141 (41.84%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  261 LCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            LC N+CGF G+ AT N+C  C+         +  AAS        T+S      V      VQ+S+     + V+   A  +  S +A      +RC SC++RVGLTGF+CRCG LYC +HRYSD+H+C FDY++AARDAI
Sbjct:   21 LCANSCGFPGNPATNNLCQNCFLAASASSSSSSAAASP------STTSLPVFPVVEKPRQAVQSSAAAAVALVVERPTAGPVESSSKASRSSSVNRCHSCRRRVGLTGFRCRCGELYCGAHRYSDRHDCSFDYKSAARDAI 155          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25
Identity = 56/157 (35.67%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  255 PILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAK--------------PKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            P LC NNCGFFGS AT N+CSKC++D+  ++  +  A  ++            ++S+AA      +S      +S  P   ++  E VEAK              P + P RC +C++RVG+TGF+CRCG ++C +HRY+++H C FD++   +D I
Sbjct:   10 PRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHAL------------TQSLAAVGAAASSS------VSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKI 148          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN6_PONAB (AN1-type zinc finger protein 6 OS=Pongo abelii GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 67/184 (36.41%), Postives = 96/184 (52.17%), Query Frame = 3
Query:  255 PILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSS------NGSESVAAATVDVQASSVEPKIISVQP----SCAS-------------------------------ELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            P+LC   CGF+G+  T  MCS CYK+ + +Q+ +    S   + V+  S S      +GS   A +T+D  +SS++P  +S Q     S AS                               E S+S+E KPK+  +RC  C+K+VGLTGF+CRCGN+YC  HRYSD HNC ++Y+  A + I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSTLDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDLQASVSDTAQQPSEEQSKSLE-KPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 193          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN6_BOVIN (AN1-type zinc finger protein 6 OS=Bos taurus GN=ZFAND6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 65/184 (35.33%), Postives = 91/184 (49.46%), Query Frame = 3
Query:  255 PILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSS------NGSESVAAATVDVQASSVEPKIISVQP-----------------------------------SCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            P+LC   CGF+G+  T  MCS CYK+ + +Q+ +    S     V   S S      +GS   A + +D  ASSV+P  +S Q                                      + E S+S+E KPK+  +RC  C+K+VGLTGF+CRCGN+YC  HRYSD HNC ++Y+  A + I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAPSVTSLSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSLLSESVASSQVDSTSVDKAIPETEDLQASVSETAQQASEEQSKSLE-KPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 193          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN5_MOUSE (AN1-type zinc finger protein 5 OS=Mus musculus GN=Zfand5 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 66/187 (35.29%), Postives = 85/187 (45.45%), Query Frame = 3
Query:  252 GPILCINNCGFFGSVATMNMCSKCYKDIMLKQ--------------------DQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSV-----------------------EPKIISVQPSCASELSESVEAK----PKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAA 671
            GP+LC   CGF+G+  T  MCS CYK+ + +Q                    D A +  +  G  +N    + GS S  +  V V A  V                       EP +    PS +   S   E K    PK   +RC  C+K+VGLTGF CRCGNL+C  HRYSDKHNCP+DY+  A
Sbjct:   10 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADAG--LNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEA 194          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN6_HUMAN (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 66/184 (35.87%), Postives = 95/184 (51.63%), Query Frame = 3
Query:  255 PILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSS------NGSESVAAATVDVQASSVEPKIISVQP----SCAS-------------------------------ELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            P+LC   CGF+G+  T  MCS CYK+ + +Q+ +    S   + V+  S S      +GS   A + +D  +SS++P  +S Q     S AS                               E S+S+E KPK+  +RC  C+K+VGLTGF+CRCGN+YC  HRYSD HNC ++Y+  A + I
Sbjct:   11 PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDVQASVSDTAQQPSEEQSKSLE-KPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 193          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP3_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  237 QAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPS-RCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            QA    P+LC + CGF+G+ AT++MCS CY+   L    A +A     S+   ++++  + +V + +  V ++ V     S + +      E      K+ P+ RC+SCKK+VGL GF CRCG  YC +HRY +KH C FD++ A+RDAI
Sbjct:  196 QASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCLLNG-ATMATGPSSSVAAASAATVATGAVTSDSCSVPSAEVNGAAFSSKNN-----PEPATVVEKKAPANRCASCKKKVGLLGFACRCGATYCGTHRYPEKHACGFDFKGASRDAI 339          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. japonica GN=SAP1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  207 ENMDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQ---PSCASELSESVEAKPK-----EGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            +  D + T  +AP     LC N+CGF G+ AT N+C  C+           LAA         T+S++   S+++  +D Q       ++  Q   P    E++ ++   P         +RCS C+KRVGLTGF+CRCG+L+C  HRYSD+H C +DY++AARDAI
Sbjct:    5 DKKDQEPTELRAPEI--TLCANSCGFPGNPATQNLCQNCF-----------LAA---------TASTSSPSSLSSPVLDKQPPRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAI 149          
The following BLAST results are available for this feature:
BLAST of FC929942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP7_ORYSJ1.374e-2637.66Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP5_ORYSJ6.821e-2643.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP11_ORYSJ1.163e-2541.84Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP3_ARATH4.421e-2535.67Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN6_PONAB2.194e-2436.41AN1-type zinc finger protein 6 OS=Pongo abelii GN=... [more]
ZFAN6_BOVIN2.866e-2435.33AN1-type zinc finger protein 6 OS=Bos taurus GN=ZF... [more]
ZFAN5_MOUSE6.384e-2435.29AN1-type zinc finger protein 5 OS=Mus musculus GN=... [more]
ZFAN6_HUMAN8.338e-2435.87AN1-type zinc finger protein 6 OS=Homo sapiens GN=... [more]
SAP3_ORYSJ1.089e-2338.00Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP1_ORYSJ1.089e-2336.53Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC34002B01EF PostHarvC1 Citrus clementina cDNA clone C34002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929942 ID=FC929942; Name=FC929942; organism=Citrus clementina; type=EST; length=688bp
GGGAAGCCTTTTTAAAAAAATCCAAGAGAGAGAGAGAGAGACACCCGGAA
AGGGAAACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCCCCGTAG
GCCGATCTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGC
TCGGGGATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGG
GGTGGTGAAAACATGGACCATGATGAGACTGGATGCCAAGCTCCTCCTGA
GGGCCCTATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTA
CTATGAATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAACAGGAT
CAAGCTAAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGAAACGTC
AAGCAGCAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAG
CTAGTTCAGTGGAGCCAAAAATCATCTCTGTGCAGCCATCATGTGCTTCA
GAATTGAGCGAGAGTGTGGAGGCAAAGCCGAAGGAGGGTCCCAGCCGGTG
CAGCAGTTGCAAGAAGCGTGTTGGTTTAACAGGATTCAAATGTCGCTGTG
GTAACTTATACTGTGTGTCACATCGCTATTCGGACAAACATAACTGCCCC
TTTGACTACCGCACTGCTGCTAGGGATGCTATAATTAA
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