FC929942

Overview
NameFC929942
Unique NameFC929942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929942_ssr25 microsatellite FC929942_ssr25:25..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14439 contig Ccv1_Contig14439:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP1_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Oryza sativa subsp. indica GN=SAP1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 61/167 (36.53%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  207 ENMDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQ---PSCASELSESVEAKPK-----EGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            +  D + T  +AP     LC N+CGF G+ AT N+C  C+           LAA         T+S++   S+++  +D Q       ++  Q   P    E++ ++   P         +RCS C+KRVGLTGF+CRCG+L+C  HRYSD+H C +DY++AARDAI
Sbjct:    5 DKKDQEPTELRAPEI--TLCANSCGFPGNPATQNLCQNCF-----------LAA---------TASTSSPSSLSSPVLDKQPPRPAAPLVEPQAPLPPPVEEMASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAI 149          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN5_HUMAN (AN1-type zinc finger protein 5 OS=Homo sapiens GN=ZFAND5 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23
Identity = 65/185 (35.14%), Postives = 84/185 (45.41%), Query Frame = 3
Query:  252 GPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQ------------AKLAASSIGSIVNETSSSNGSESVAAAT------VDVQASSV-----------------------EPKIISVQPSCA----SELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAA 671
            GP+LC   CGF+G+  T  MCS CYK+ + +Q              +    S   S+    +S N  E  A +T      V V A  V                       EP +    PS +    S+  E     PK   +RC  C+K+VGLTGF CRCGNL+C  HRYSDKHNCP+DY+  A
Sbjct:   10 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEA 194          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP5_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 55/141 (39.01%), Postives = 80/141 (56.74%), Query Frame = 3
Query:  261 LCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            LC NNCG   + AT NMC KC+   ++    A       GSI+  ++ S    S  A  V      + P+ I           ++V+ + ++  +RCS C+K+VGLTGF+CRCG L+C  HRYSD+H+C +DY+TA R+AI
Sbjct:   25 LCTNNCGVTANPATNNMCQKCFNASLVS---AAAGVVESGSILKRSARSVNLRSSPAKVV------IRPREI-----------DAVKKRDQQIVNRCSGCRKKVGLTGFRCRCGELFCSEHRYSDRHDCSYDYKTAGREAI 145          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP9_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  204 GENMDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPK-------IISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            G   +   +  Q+    P LC+  CGFFGS + M++CSKCY+ I  ++ Q  +A +++        S   S   +    +  A  VEPK       ++S +PS +S + E+ E       +RC  C K+VG+ GFKC+CG+ +C  HRY + H+C FD++   R  I
Sbjct:    2 GSEQNDSTSFTQSQASEPKLCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAV------EKSFKPSPPRSLFIAEPPAVVVEPKPEKAAVVVVSAEPS-SSAVPEANEPSRPARTNRCLCCNKKVGIMGFKCKCGSTFCGEHRYPETHDCSFDFKEVGRGEI 161          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN6_RAT (AN1-type zinc finger protein 6 OS=Rattus norvegicus GN=Zfand6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 66/201 (32.84%), Postives = 96/201 (47.76%), Query Frame = 3
Query:  249 EGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSS------NGSESVAAATVDVQASSVEPKIISVQ------------------------------------------PSCAS--------ELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            + P+LC   CGF+G+  T  MCS CYK+ + +Q+ +    S   + V+  S S      +GS   A + +D  +SS++P  +S Q                                          PS  S        E S+S+E KPK+  +RC  C+K+VGLTGF+CRCGN+YC  HRYSD HNC ++Y+  A + I
Sbjct:    9 QAPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSSLSESLPVQCADGSVPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSETEDLQGPRAEGLVPLECDPPSSVSDTTQQPSEEQSKSLE-KPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 208          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: ZFAN6_MOUSE (AN1-type zinc finger protein 6 OS=Mus musculus GN=Zfand6 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 66/201 (32.84%), Postives = 96/201 (47.76%), Query Frame = 3
Query:  249 EGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSS------NGSESVAAATVDVQASSVEPKIISVQ------------------------------------------PSCAS--------ELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            + P+LC   CGF+G+  T  MCS CYK+ + +Q+ +    S   + V+  S S      +GS   A + +D  +SS++P  +S Q                                          PS  S        E S+S+E KPK+  +RC  C+K+VGLTGF+CRCGN+YC  HRYSD HNC ++Y+  A + I
Sbjct:    9 QAPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAASVSSLSESLPVQCADGSVPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSETEDLQGPRAEGLVPLECDPPSSVSDTTQQPSEEQSKSLE-KPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKI 208          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP12_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 59/161 (36.65%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  207 ENMDHDETGCQAPPEGPILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEP--KIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            E  +       A  E   LC + CGFFGS  T NMCSKCY+D +        A S + S    +SSS  + S    TV +  ++  P   +   +    +  S S  A  K  P+RC +C+K+VGL GF+CRCG  +C +HR++DKH C FD++ + R+ I
Sbjct:   62 EEEEASTAAAAAADEQLALCSSGCGFFGSKETNNMCSKCYRDHLK-------ATSPLFS----SSSSPATASTTDITVPIAPATTAPTPSLKGKEEEATAAASSSAAAAAK--PNRCVACRKKVGLLGFECRCGGTFCSTHRHADKHACTFDFKKSDREKI 209          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP2_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Oryza sativa subsp. japonica GN=SAP2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 60/154 (38.96%), Postives = 80/154 (51.95%), Query Frame = 3
Query:  225 ETGCQAPPEGPIL-CINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            E G +   E P L C N CGFFGS  T  +CSKCY+  ++ Q  A  AA+          S+   + V  A          P+ + V             AK K   SRC++C + VGL GF+CRCG ++C +HRYSD+H+C +DYR A RDAI
Sbjct:    2 EQGSERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPSAAAQ---------SAEHDQVVLPA----------PEGVPVDEGAMPPPPPRHGAKTK---SRCAACGRSVGLMGFECRCGAVFCGAHRYSDRHDCGYDYRGAGRDAI 133          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  255 PILCINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            P LCI  CGFF +  T N+CSKCY D +  +    LA  ++        ++  +E V A          E  ++  +  CA                    CKK+VGL GF CRCG+L+  SHRY ++H+CP DY++AA D +
Sbjct:    5 PSLCIRGCGFFSTSQTKNLCSKCYNDFLKDESARYLATFNV--------NTKAAEEVTAQ---------EATVLGSKGGCA--------------------CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVL 110          
BLAST of FC929942 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 46/140 (32.86%), Postives = 67/140 (47.86%), Query Frame = 3
Query:  264 CINNCGFFGSVATMNMCSKCYKDIMLKQDQAKLAASSIGSIVNETSSSNGSESVAAATVDVQASSVEPKIISVQPSCASELSESVEAKPKEGPSRCSSCKKRVGLTGFKCRCGNLYCVSHRYSDKHNCPFDYRTAARDAI 683
            C   CG +G+    N+CS CYK  +L+   A                                   EP+    Q  C    S +VE +P +   RC  CK++VG+ GFKCRCG+++C SHRY ++H+CPFDY+ + R A+
Sbjct:   10 CEGGCGLYGTRVNNNLCSLCYKKSVLQHSPAL--------------------------------RFEPETEQSQ-CCPPTNSPAVEEEPVK-KRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLAL 115          
The following BLAST results are available for this feature:
BLAST of FC929942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
SAP1_ORYSI1.089e-2336.53Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN5_HUMAN1.422e-2335.14AN1-type zinc finger protein 5 OS=Homo sapiens GN=... [more]
SAP5_ARATH5.404e-2339.01Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP9_ARATH1.204e-2232.93Zinc finger A20 and AN1 domain-containing stress-a... [more]
ZFAN6_RAT2.054e-2232.84AN1-type zinc finger protein 6 OS=Rattus norvegicu... [more]
ZFAN6_MOUSE2.054e-2232.84AN1-type zinc finger protein 6 OS=Mus musculus GN=... [more]
SAP12_ORYSJ2.682e-2236.65Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP2_ORYSJ1.019e-2138.96Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ARATH3.069e-1834.27Putative zinc finger A20 and AN1 domain-containing... [more]
SAP10_ARATH2.872e-1632.86Zinc finger A20 and AN1 domain-containing stress-a... [more]

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Properties
Property NameValue
Genbank descriptionC34002B01EF PostHarvC1 Citrus clementina cDNA clone C34002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929942 ID=FC929942; Name=FC929942; organism=Citrus clementina; type=EST; length=688bp
GGGAAGCCTTTTTAAAAAAATCCAAGAGAGAGAGAGAGAGACACCCGGAA
AGGGAAACGAGGACGTCTCTAATCGGTTTTTGCCTGCTCTCTCCCCGTAG
GCCGATCTGGTCCATTTAATTTTAGGGGCTCATTGGATGCTGGCTTGAGC
TCGGGGATCGGCTTAAGGGATTCATTGCTGTTTCTTCTGTTGCTCGCAGG
GGTGGTGAAAACATGGACCATGATGAGACTGGATGCCAAGCTCCTCCTGA
GGGCCCTATCTTGTGCATCAACAATTGTGGTTTCTTTGGAAGTGTGGCTA
CTATGAATATGTGTTCCAAATGCTACAAGGATATAATGCTGAAACAGGAT
CAAGCTAAGCTTGCTGCTTCATCTATTGGAAGCATTGTGAATGAAACGTC
AAGCAGCAATGGAAGTGAATCTGTTGCTGCTGCCACTGTTGATGTGCAAG
CTAGTTCAGTGGAGCCAAAAATCATCTCTGTGCAGCCATCATGTGCTTCA
GAATTGAGCGAGAGTGTGGAGGCAAAGCCGAAGGAGGGTCCCAGCCGGTG
CAGCAGTTGCAAGAAGCGTGTTGGTTTAACAGGATTCAAATGTCGCTGTG
GTAACTTATACTGTGTGTCACATCGCTATTCGGACAAACATAACTGCCCC
TTTGACTACCGCACTGCTGCTAGGGATGCTATAATTAA
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