FC929948

Overview
NameFC929948
Unique NameFC929948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12635 contig Ccv1_Contig12635:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  327 RSLSQVLNFMDQMTENPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            R++ Q+++ MD++ E+          SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++P
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIP 221
[Close]
BLAST of FC929948 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 3 
Query:  327 RSLSQVLNFMDQMTENPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 659
            RS+ Q+L+ MD++ E+      R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+              R     Y +R+ LP+   + +++KAE+K+GVL +T+P
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIP 218
The following BLAST results are available for this feature:
BLAST of FC929948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS21C_SOLLC8.813e-1233.87Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA5.713e-1133.33Small heat shock protein, chloroplastic OS=Pisum s... [more]

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Properties
Property NameValue
Genbank descriptionC34002B07EF PostHarvC1 Citrus clementina cDNA clone C34002B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929948 ID=FC929948; Name=FC929948; organism=Citrus clementina; type=EST; length=659bp
GGTCTTCAGCAAGAAATCAGCCGCACTCACAAAAAGTATTTTGAAATCTC
TGCATTGTTTCGTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCT
TGCTCTCAAGAGGCTTGCTTCTTCTAATGTCATACCCAGGGCTTTACGCT
GCACCGTCGCTCCTTCTGCTACTTCAGCATCTCGGTTCTTCAACACAAAC
GCTGTTCATCAATACGATGACGGCGGAGACGACCGTGATCTCGACATTGA
TCGCCGTTCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAG
ATGTGTTTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAAC
TTCATGGATCAGATGACGGAGAATCCTTTCTTCAGCGGCACACGTGGTGG
ACTGCGCAGAGGCTGGGATGCTAAAGAAACCGATGATGCGTTGAACCTCA
GCATCGACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAG
CAGAACACGCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGA
AGAGAGCGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCT
ACAGGACTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAAGTG
ACGGTGCCC
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