FC929955

Overview
NameFC929955
Unique NameFC929955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15071 contig Ccv1_Contig15071:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_MACFA (NADH-cytochrome b5 reductase 3 OS=Macaca fascicularis GN=CYB5R3 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI+++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y L++ P
Sbjct:   87 GNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTLDRAP 243          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 58/150 (38.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMY---------PQGRMSHHFREMRVGDYLAVKGPKGRFRYQP-------GQVRA----FGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            GE V++ YTP + D ++G  +++IK+Y           G+MS HF  +R+GD +  KGP G F Y         G++          AGG+GITP + V +A L +P DKT++ L++AN T EDILL+EELD  A  +PD+F +++ ++Q
Sbjct:  653 GENVMRAYTPISGDEELGRLDMLIKVYFANEHPAFPDGGKMSQHFESLRIGDTVEFKGPLGHFVYDGRGSYTLNGKLHKHATHMSFVAGGTGITPCYAVIKAALRDPEDKTQISLVFANNTEEDILLREELDELANNHPDRFHLWHTVSQ 802          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_PIG (NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI+++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y +++ P
Sbjct:   58 GNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDRAP 214          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_CANFA (NADH-cytochrome b5 reductase 3 OS=Canis familiaris GN=CYB5R3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI+++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y +++ P
Sbjct:   87 GNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPIIKTVKSVGMIAGGTGITPMLQVIRAIIKDPHDPTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDKAP 243          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R3_BOVIN (NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  304 GEEVIKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGP--------KGRFRYQPGQ--------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            G  VI+PYTP + D D G  +LVIK+Y +         G+MS +   M++GD +  +GP        KG+F  +P +        V++ GM AGG+GITPM QV RAI+++P+D T  HL++AN T +DILL+ EL+    ++  +F ++Y +++ P
Sbjct:   86 GNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVDKAP 242          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 60/145 (41.38%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            ++ YTPT+   +VG+F+LV+K+Y +G          MS H   + +G  L VKGP G   Y          +P       M AGG+GITP++QV +AIL++P D T++H++YAN T +DILLKEELD +A KY D+  ++YV+ +
Sbjct:  681 MRAYTPTSSVHEVGYFDLVVKVYFKGVHPKFPNGGIMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVHGKPRFATRLAMLAGGTGITPIYQVVQAILKDPEDCTEMHVVYANRTEDDILLKEELDEWAKKY-DRLKVWYVIQE 824          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA_SOLLC (Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQG---------RMSHHFREMRVGDYLAVKGPKGRFRYQ-PGQVRAFG---------MTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQ 693
            ++ YTPT+   +VG FELV+K+Y +G         +MS H   + +G +L VKGP G   YQ  G     G         M AGG+GITP++QV ++IL++P D T+++++YAN T +DILLK+ELD +A + P++  ++YV+ +
Sbjct:  705 MRAYTPTSTVDEVGFFELVVKIYFKGVHPKFPNGGQMSQHLDSLPIGAFLDVKGPLGHIEYQGKGNFLVHGKQKFAKKLAMIAGGTGITPVYQVMQSILKDPEDDTEMYVVYANRTEDDILLKDELDAWAEQVPNRVKVWYVVQE 849          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQGR---------MSHHFREMRVGDYLAVKGPKGRFRY----------QPGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+   +VG+F+LV+K+Y +G          MS H   + +G  L VKGP G   Y          +P       M AGG+GITP++QV RAIL++P D T++H++YAN T +DILLKEELD +A KY D+  ++YV+
Sbjct:  685 MRAYTPTSSVHEVGYFDLVVKVYFKGVHPKFPTGGIMSQHLDSLPIGSVLDVKGPLGHIVYTGRGNFLVHGKPRFATRLAMLAGGTGITPIYQVVRAILKDPEDCTEMHVVYANRTEDDILLKEELDEWAKKY-DRLKVWYVI 826          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.531e-23
Identity = 57/143 (39.86%), Postives = 88/143 (61.54%), Query Frame = 1
Query:  316 IKPYTPTTLDSDVGHFELVIKMYPQ---------GRMSHHFREMRVGDYLAVKGPKGRFRYQ----------PGQVRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVL 687
            ++ YTPT+    VG+ +LVIK+Y +         G MS H   + +G  L +KGP G   YQ          P       M AGG+GITP++QV ++IL +P D+T++ ++YAN T +DIL++EEL+G+A+K+PD+  I+YV+
Sbjct:  705 LRAYTPTSTVDAVGYIDLVIKVYFKNVHPRFPNGGLMSQHPDSLPIGAVLDIKGPLGHIEYQGRGKFMVSGKPKFANKLAMLAGGTGITPIYQVIQSILSDPEDETEMFVVYANRTEDDILVREELEGWASKFPDRLKIWYVV 847          
BLAST of FC929955 vs. ExPASy Swiss-Prot
Match: NB5R2_RAT (NADH-cytochrome b5 reductase 2 OS=Rattus norvegicus GN=Cyb5r2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  307 EEVIKPYTPTTLDSDVGHFELVIKMY--------PQG-RMSHHFREMRVGDYLAVKGPKGRFRY-QPGQ---------------VRAFGMTAGGSGITPMFQVTRAILENPNDKTKVHLIYANVTYEDILLKEELDGFAAKYPDQFTIYYVLNQPP 699
            E VI+ YTP + D D G  +L+IK+Y        P+G +M+ +   M++GD +  +GP GR  Y +PG                V   GM AGG+GITPM Q+ R I ++ +D T++ L++AN T EDILL++EL+  A  + +QF+++Y L++PP
Sbjct:   63 ELVIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNEPGTLLIKTDKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDGTRMSLLFANQTEEDILLRKELEEVATTHQNQFSLWYTLDRPP 218          
The following BLAST results are available for this feature:
BLAST of FC929955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
NB5R3_MACFA2.990e-2438.85NADH-cytochrome b5 reductase 3 OS=Macaca fascicula... [more]
NIA_VOLCA5.101e-2438.67Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
NB5R3_PIG5.101e-2438.22NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus s... [more]
NB5R3_CANFA5.101e-2438.22NADH-cytochrome b5 reductase 3 OS=Canis familiaris... [more]
NB5R3_BOVIN5.101e-2438.22NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CY... [more]
NIA1_SOYBN8.700e-2441.38Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA_SOLLC1.136e-2340.00Nitrate reductase [NADH] OS=Solanum lycopersicum G... [more]
NIA2_SOYBN1.136e-2342.66Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_BRANA2.531e-2339.86Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NB5R2_RAT3.306e-2338.46NADH-cytochrome b5 reductase 2 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC34002C03EF PostHarvC1 Citrus clementina cDNA clone C34002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929955 ID=FC929955; Name=FC929955; organism=Citrus clementina; type=EST; length=701bp
GAGAGCACCAGAAGATAAGAAATGGAATAAACCGCACACTATTTTCTCTC
CCACCCATTTACTGGTTCCATTTCTTGTTTTGATTTTTGAGTTAAAAATT
TATTCTCTATATACATATATTGATAAATCCGAGGCTTTTAGTTCTTCTAT
TGGTGAGCTTTTCTGTATCATCATGGATATGGAATATCTGCAGAACTTAG
ATGTTCAGCTTCTCGTTGGTGGAGCTGTGGCTGTTTTGGCCATTGCTGTT
GGTGCTGCTTACTTGTATTCCTCTAAGAAGCCCAAAGGGGCAAGGATAGT
CAGGGTGAAGAGGTTATTAAACCATATACCCCAACCACATTGGATTCTGA
TGTTGGTCATTTTGAATTGGTTATTAAGATGTACCCCCAAGGAAGGATGT
CACACCATTTCCGTGAGATGCGTGTTGGTGATTATCTTGCCGTGAAGGGA
CCCAAGGGTCGATTCAGGTATCAACCTGGCCAGGTCAGAGCATTTGGGAT
GACTGCAGGAGGTTCTGGCATCACTCCAATGTTCCAAGTTACTAGAGCCA
TATTAGAGAACCCAAATGACAAGACAAAGGTGCACCTCATTTATGCCAAT
GTTACATATGAGGACATTCTTTTAAAGGAAGAATTGGATGGATTTGCGGC
GAAGTACCCTGATCAATTCACAATCTACTATGTGTTGAATCAGCCTCCTG
A
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