FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:36..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_PIG (Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.962e-48
Identity = 99/167 (59.28%), Postives = 120/167 (71.86%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  LT GI  LFK+NKV  V GYG+    ++V+    +G   V+  KNI+IATGS+V   PGITIDE  +VSSTGAL+L +VP+++VVIGAG
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_RAT (Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.170e-47
Identity = 100/167 (59.88%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++   V ++L  MM QK  AV  LT GI  LFK+NKV +V G+G+    ++V+  T +G   V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP++LVVIGAG
Sbjct:   56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHLAHGKDFASRGIEIPEVRLNLEKMMEQKRSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATTADGSTQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_CRIGR (Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.997e-47
Identity = 99/167 (59.28%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++ S V ++L  MM QK  AV  L  GI  LFK+NKV +V G+G+    ++V+    +G + V+  KNI+IATGS+V   PGITIDE  IVSSTGAL+L +VP++LVVIGAG
Sbjct:   56 AAIKAAQLGFKTVCIEKNDTLGGTCLNVGCIPSKALLNNSHYYHLAHGRDFASRGIELSEVRLNLEKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSSQVIGTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_MOUSE (Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.448e-47
Identity = 101/190 (53.16%), Postives = 125/190 (65.79%), Query Frame = 2
Query:  149 RGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            R +A    E D            AAIK+AQLG KT CIEK   LGGTCLNVGCIPSKALL++SH YH A    FAS G++   V ++L  MM QK  AV  LT GI  LFK+NKV +V G+G+    ++V+    +G   V+  KNI++ATGS+V   PGITIDE  IVSSTGAL+L +VP++LVVIGAG
Sbjct:   33 RTYADQPIEADVTVIGSGPGGYVAAIKSAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEIPEVRLNLEKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSTQVIDTKNILVATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAG 222          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_TRYCR (Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi GN=LPD PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.207e-46
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            A+IKAAQLG+KT C+EKRGALGGTCLNVGCIPSKALLH++H+YH+A  +FA +G+     V +D   M  QK++AV  LT G+E LFKKNKVTY KG G F +   + V+ ++G   + + K  IIATGS+   LP +  DEK ++SSTGALAL  VPK +VVIG G
Sbjct:   26 ASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHVYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMFETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMVVIGGG 192          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_MANSE (Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.441e-45
Identity = 93/166 (56.02%), Postives = 120/166 (72.29%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAIKAAQLG+K   +EK  +LGGTCLNVGCIPSKALLH++H+YH A H F   G++   V+ +  AMM  K  AV  LT GI  LF+KNKV  V+G G  ++P++V V   +G  T V  KNI+IATGS+V   PG+T DEK+I++STGAL+L  VPK+++VIGAG
Sbjct:   45 AAIKAAQLGMKVVSVEKEPSLGGTCLNVGCIPSKALLHNTHLYHMAKHDFKHRGIETGEVKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPNKVEVKGEKGVET-VNTKNILIATGSEVTPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAG 209          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_YEAST (Dihydrolipoyl dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LPD1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 98/203 (48.28%), Postives = 127/203 (62.56%), Query Frame = 2
Query:  128 KYSFSLTRGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKG------KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            K +FS T    + +  +D            AAIKAAQLG  T C+EKRG LGGTCLNVGCIPSKALL++SH++H+        G+  +  +++++      KD AV  LT GIE LFKKNKVTY KG G F   +++ V  ++G    VK       KNII+ATGS+V   PGI IDE++IVSSTGAL+L E+PK L +IG G
Sbjct:   11 KRAFSSTVRTLTINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGG 213          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEPU (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putida GN=lpd3 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.897e-43
Identity = 90/167 (53.89%), Postives = 119/167 (71.26%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAI+A QLGL   C+E R  LGGTCLNVGC+PSKALLH+S +Y  A    FA  G++     ++L  MM QKD++V+ LT+GIE LF+KNKV ++KG+G      +V V   +G  T ++ K+I+IATGS+   LPG+TID +RI+ STGAL+L +VPK LVVIGAG
Sbjct:   18 AAIRAGQLGLTVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGDEFAHLGIEVKPT-LNLAQMMKQKDESVTGLTKGIEYLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETALQAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPQVPKHLVVIGAG 183          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_RHOCA (Dihydrolipoyl dehydrogenase OS=Rhodobacter capsulatus GN=lpd PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.526e-42
Identity = 91/165 (55.15%), Postives = 115/165 (69.70%), Query Frame = 2
Query:  221 AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AI+ AQLGLKT C+E RGALGGTCLNVGCIPSKALLH++H  HE   +F   G+  + V+VD           +   T+GIE LFKKNKVTY++G+G   +P +V V     G+ V   KNI+IATGS+   LPGI IDE+ +V+STGAL+L +VPK +VVIGAG
Sbjct:   19 AIRCAQLGLKTACVEGRGALGGTCLNVGCIPSKALLHATHELHEVHENFEKMGLMGAKVKVDW--------AKIDGNTKGIEFLFKKNKVTYLRGWGSIPAPGQVKV-----GDEVHTAKNIVIATGSESSGLPGIEIDEQTVVTSTGALSLAKVPKSMVVIGAG 170          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEAE (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aeruginosa GN=lpd3 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 89/167 (53.29%), Postives = 119/167 (71.26%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAI+A QLGLK  C+E R  LGGTCLNVGC+PSKALLH+S +Y  A    FA  G++ S  E+DL  MM QKD++V+ LTRG+E LF+K+KV ++KG+        V V   +GG+  ++ ++I+IATGS+   LPG+ +D +RI+ STGAL L EVP+ LVVIGAG
Sbjct:   19 AAIRAGQLGLKVACVEGRETLGGTCLNVGCMPSKALLHASELYAAASGGEFARLGIRVSP-ELDLAQMMKQKDESVAALTRGVEFLFRKHKVQWIKGWARLQGEGRVGVALADGGHAQLEARDIVIATGSEPAPLPGVPVDNQRILDSTGALELVEVPRHLVVIGAG 184          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
DLDH_PIG8.962e-4859.28Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus ... [more]
DLDH_RAT1.170e-4759.88Dihydrolipoyl dehydrogenase, mitochondrial OS=Ratt... [more]
DLDH_CRIGR1.997e-4759.28Dihydrolipoyl dehydrogenase, mitochondrial OS=Cric... [more]
DLDH_MOUSE4.448e-4753.16Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus ... [more]
DLDH_TRYCR2.207e-4656.89Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi G... [more]
DLDH_MANSE2.441e-4556.02Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 ... [more]
DLDH_YEAST1.211e-4448.28Dihydrolipoyl dehydrogenase, mitochondrial OS=Sacc... [more]
DLDH3_PSEPU3.897e-4353.89Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putid... [more]
DLDH_RHOCA2.526e-4255.15Dihydrolipoyl dehydrogenase OS=Rhodobacter capsula... [more]
DLDH3_PSEAE3.299e-4253.29Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aerug... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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