FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: MERA_SHEPU (Mercuric reductase OS=Shewanella putrefaciens GN=merA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  221 AIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP----AMMAQKDKAVSNLTRG--IEGLFKKN-KVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGA 712
            AIKAA+ G K T IE    +GG C+NVGC+PSK L+ ++ +  +  ++       F+ +E   P    A++ Q+  A     R    + + + N  ++ +KG+ +F + + + V   +G    V    I+IATGS     P   + E    +ST AL   E+P+ LVVIG+
Sbjct:  110 AIKAAEGGAKVTLIEGADVIGGCCVNVGCVPSKILIRAAQLAQQQRNN------PFTGLENHAPQLSRALLTQQQTARVEELRAAKYQNILETNPALSLLKGWAQFKNANTLIVRKNDGTEQAVHADKILIATGSTPTIPPIDGLTETPYWTSTEALFAQELPQHLVVIGS 274          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_DICDI (Glutathione reductase OS=Dictyostelium discoideum GN=gsr PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 45/150 (30.00%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  281 GGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            GGTC+NVGC+P K + ++S +  E +++  S+G  F    V+ + P +   +D+ +  L    +    K+ +  + GYG F  P E+ V+   G        +I+IA G    V  +PG  +     ++S G   L ++PK  +V+GAGY
Sbjct:   47 GGTCVNVGCVPKKVMWNTSFI-KEMINAAPSYGFDFGGQQVKFNWPTIKKARDEYIKRLNGIYDSNLAKDNIVRINGYGRFSGPKEIQVNGANGEK--YTADHILIAAGGRPTVPDVPGKELG----ITSDGFFELEDLPKSTLVVGAGY 189          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PHOPR (Soluble pyridine nucleotide transhydrogenase OS=Photobacterium profundum GN=sthA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 46/166 (27.71%), Postives = 73/166 (43.98%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+   + GL    IE+  ++GG C + G IPSKAL H+     E   +   +    SS+      ++      V+  TR  +G + +NK + + G   FI    V V   +    +      +IATGS      G+  D  R+  S   L L   P+ +++ GAG
Sbjct:   24 AAMGLTKAGLNVAVIERENSVGGGCTHWGTIPSKALRHAVSRIIEYNQN-PLYCKNNSSLHSTFSQILGHAQDVVNKQTRMRQGFYDRNKCSLIFGEASFIDAHTVRVKNADNSTDLYSADKFVIATGSRPYHPEGVDFDHSRVYDSDSILQLEHDPRHIIIYGAG 188          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_CALJA (Glutathione reductase, mitochondrial OS=Callithrix jacchus GN=GSR PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS-----LPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E +H    +G      + +   +  ++D  VS L    +    K  +  + G+  F S ++    TIE         +I+IATG    S     +PG ++     ++S G   L E+P   V++GAGY
Sbjct:   79 SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFLHDHGDYGFSSCEGKFNWRVIKEKRDTYVSRLNTIYQNNLTKAHIEIIHGHAVFTSDTK---PTIEVSGRKYTAPHILIATGGMPSSPHESQIPGASLG----ITSDGFFELEELPSRSVIVGAGY 241          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: YKGC_ECOLI (Probable pyridine nucleotide-disulfide oxidoreductase ykgC OS=Escherichia coli (strain K12) GN=ykgC PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 52/170 (30.59%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  221 AIKAAQLGLKTTCIEKRGAL-GGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            A+  A+ G +   IE+  A+ GGTC+N+GCIP+K L+H +  +                   D    + +K++ V+ L  +    L     +  + G  EFI+   + V   E GN  + G+ I I TG+   V  +PGIT     +  STG L L E+P  L ++G GY
Sbjct:   19 AVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQH------------------TDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPE-GNLEIHGEKIFINTGAQTVVPPIPGIT-TTPGVYDSTGLLNLKELPGHLGILGGGY 168          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TYTR_TRYBB (Trypanothione reductase OS=Trypanosoma brucei brucei GN=TPR PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 49/157 (31.21%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  275 ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVKGYGEFISPSEVSVDTIEGGNTVVKGK----NIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            ALGGTC+NVGC+P K L+ +   Y + +   A  G +F  SSV+ +   ++A K++AV ++ +  EG+F   + + +  G+G   S + V V       + VK +    +I++ATGS   + ++PG+    +  +SS  A  L E P+ ++ +G G+
Sbjct:   47 ALGGTCVNVGCVPKK-LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGV----EHCISSNEAFYLPEPPRRVLTVGGGF 198          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_STRTR (Glutathione reductase OS=Streptococcus thermophilus GN=gor PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 52/170 (30.59%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +A +AA  G K    E +  +GGTC+NVGC+P K + + + +  E +H +A  +G   +    D   + A +   +  +    E  F  N V  V  Y  F+ P      T+E    +    +I+IATG      ++PG     +  ++S G   L+EVPK   VIGAGY
Sbjct:   19 SANRAAMHGAKVILFEGK-EVGGTCVNVGCVPKKVMWYGAQV-AETLHRYAGEYGFDVTINNFDFATLKANRQAYIDRIHGSFERGFDSNGVERVYEYARFVDP-----HTVEVAGELYTAPHILIATGGHPLYPNIPG----SEYGITSDGFFELDEVPKRTAVIGAGY 177          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHRC_BRARP (Glutathione reductase, cytosolic OS=Brassica rapa subsp. pekinensis GN=GR1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 48/170 (28.24%), Postives = 85/170 (50.00%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            A +   +L       E+ G +GGTC+  GC+P K L++ +  Y   +    ++G + + +V+ +   ++ +K   +  L    + L     V   +G G  + P+EV V  I+G       K+I+IATGS  +  ++PG     +  ++S  AL+L E PK  +V+G GY
Sbjct:   52 AKVGICELPFHPISSEEIGGVGGTCVIRGCVPKKILVYGA-TYGGELEDARNYGWEINGNVDFNWKKLLQKKTDEILRLNNIYKRLLANAAVKLYEGEGRIVGPNEVEVRQIDGTKISYTAKHILIATGSRAQKPNIPG----HELAITSDEALSLEEFPKRAIVLGGGY 216          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 51/175 (29.14%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  221 AIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            A +AA LG K   ++            LGGTC+NVGCIP K L+H + +   A+     +G +++  V+ +  AM       + +L  G     ++  VTYV  +GEF+   ++     +G  T       +IATG   + L GI  D++  ++S    +L   P   +V+GA Y
Sbjct:  226 AKEAANLGKKVMVLDFVVPSPQGTTWGLGGTCVNVGCIPKK-LMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYL-GIQGDKEYCITSDDLFSLPYCPGCTLVVGASY 398          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_VIBVY (Soluble pyridine nucleotide transhydrogenase OS=Vibrio vulnificus (strain YJ016) GN=sthA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 46/166 (27.71%), Postives = 74/166 (44.58%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+   + GLK   +EK  ++GG C + G IPSKAL H+     E  +S        SS+      ++      +   TR  +G + +N+   + G   F     +SV   +G   V      +IATGS       +  + +RI  S   L+L   P+ +++ GAG
Sbjct:   21 AAMGLTKAGLKVAVVEKESSVGGGCTHWGTIPSKALRHAVSRIIE-FNSNPLFCKNNSSLHATFSTILGHAKSVIDKQTRLRQGFYDRNQCQLIFGTARFTDAHTISVTQNDGTEEVYTADKFVIATGSRPYQPADVDFNHERIYDSDSILSLKHDPRHIIIYGAG 185          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
MERA_SHEPU4.202e-1331.58Mercuric reductase OS=Shewanella putrefaciens GN=m... [more]
GSHR_DICDI4.202e-1330.00Glutathione reductase OS=Dictyostelium discoideum ... [more]
STHA_PHOPR7.167e-1327.71Soluble pyridine nucleotide transhydrogenase OS=Ph... [more]
GSHR_CALJA7.167e-1328.49Glutathione reductase, mitochondrial OS=Callithrix... [more]
YKGC_ECOLI9.361e-1330.59Probable pyridine nucleotide-disulfide oxidoreduct... [more]
TYTR_TRYBB9.361e-1331.21Trypanothione reductase OS=Trypanosoma brucei bruc... [more]
GSHR_STRTR9.361e-1330.59Glutathione reductase OS=Streptococcus thermophilu... [more]
GSHRC_BRARP9.361e-1328.24Glutathione reductase, cytosolic OS=Brassica rapa ... [more]
TRXR3_MOUSE1.223e-1229.14Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
STHA_VIBVY1.223e-1227.71Soluble pyridine nucleotide transhydrogenase OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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