FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEAE (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa GN=sthA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P+ L++ GAG
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEAB (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=sthA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P+ L++ GAG
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEA8 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=sthA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P+ L++ GAG
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEA7 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas aeruginosa (strain PA7) GN=sthA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 47/169 (27.81%), Postives = 76/169 (44.97%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ A++ G K   ++ R  +GG C ++G IPSKAL HS     E    F ++ +     E      P ++   D+ +S       G + +N++    G   F+    V V T  G    +     +IATGS       I  +  R+  S   L+L+  P+ L++ GAG
Sbjct:   20 AAMNASKYGRKLAVVDSRRVVGGNCTHLGTIPSKALRHSVKQIIE----FNTNPMFRQIGEPRWFSFPDVLKSADRVISKQVASRTGYYARNRIDMFTGTASFVDERTVEVVTPSGAVERLVADQFVIATGSRPYRPSDINFNHPRVYDSDTILSLSHTPRRLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PROMH (Soluble pyridine nucleotide transhydrogenase OS=Proteus mirabilis (strain HI4320) GN=sthA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 46/166 (27.71%), Postives = 75/166 (45.18%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E  +    +  +   +      ++ Q    +S  T+  +G +++N  T   G   FI    +SV   +G   ++   N IIATGS     P +     RI +S   L L   P+ +++ GAG
Sbjct:   20 AAMGLVKQGKRVAVIERYDQVGGGCTHWGTIPSKALRHAVSRIIE-FNQNPLYSDQSRLINSSFSQILRQASTVISQQTKMRQGFYERNHCTMYSGEAAFIDDHRISVRYPDGTCDILSADNFIIATGSRPYCPPDVDFSHSRIYNSDTILDLEHEPRHVIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSESM (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. tomato GN=sthA PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + V+V    G    +    IIIATGS       I    KRI  S   L+L   P++L++ GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRREVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSVNVVCANGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TYTR_TRYCO (Trypanothione reductase OS=Trypanosoma congolense GN=TPR PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 49/157 (31.21%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  275 ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVKGYGEFISPSEVSVDTIEGGNTVVK----GKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            ALGGTC+NVGC+P K L+ +   Y + +   A  G +F  S+++ +   ++A K+ AV ++ +  E +FK  + + +  G+G     + V+V       + VK     ++IIIATGS   +  +PGI    +  +SS  A  L E P+ ++ +G G+
Sbjct:   47 ALGGTCVNVGCVPKK-LMVTGAQYMDQLRESAGFGWEFDASTIKANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFLGWGALEQKNVVTVREGADPKSKVKERLQAEHIIIATGSWPQMLKIPGI----EHCISSNEAFYLEEPPRRVLTVGGGF 198          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 50/179 (27.93%), Postives = 83/179 (46.37%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AA +A++LG K  C++            LGGTC+NVGCIP K L+H + +   ++H    +G K     VE     +       +++L  G     ++  VTY+  YGEF  P E+S    +     +     +I+TG   K   +PG+   ++  ++S     L   P + + +GA Y
Sbjct:  187 AAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKK-LMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGV---KEYTITSDDLFQLPYSPGKTLCVGASY 361          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEU2 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=sthA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 49/169 (28.99%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + ++V    G    +    IIIATGS       I    KRI  S   L+L   P++L++ GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSINVVCTNGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSE14 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=sthA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 50/169 (29.59%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS     + +  F ++ +  +  E      P ++   +  +S         + +N+V    G G F   + V+V    G    +    IIIATGS       I    KRI  S   L+L   P++L++ GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSV----KQIIQFNTNPMFRAIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSVNVVCSNGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAG 184          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
STHA_PSEAE3.557e-1227.81Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEAB3.557e-1227.81Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA83.557e-1227.81Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSEA73.557e-1227.81Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PROMH3.557e-1227.71Soluble pyridine nucleotide transhydrogenase OS=Pr... [more]
STHA_PSESM4.646e-1229.59Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
TYTR_TRYCO6.068e-1231.21Trypanothione reductase OS=Trypanosoma congolense ... [more]
TRXR1_CAEEL6.068e-1227.93Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]
STHA_PSEU26.068e-1228.99Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
STHA_PSE146.068e-1229.59Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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