FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:36..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25
Identity = 68/171 (39.77%), Postives = 102/171 (59.65%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEG----GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AAI+A QLGL  T +EK  A GGTCLN GCIPSKA++ +S + HEA H+    GV ++  +VD+  M+  KD  V  LT G+E L K N V  ++G  EF    ++ V  + G    G+  ++ ++ I++TGS    +PG    +  ++ S  ALA+ E+P  +V++G GY
Sbjct:   24 AAIRAGQLGLDVTLVEK-DAYGGTCLNYGCIPSKAMITASGVAHEAGHA-EEMGV-YADPDVDVAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRV--VHGGDGQGSETIEYEHAIVSTGSRPIEVPGFDFGDDPVLDSRQALAMAELPSSMVIVGGGY 189          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.163e-25
Identity = 66/169 (39.05%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH--SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AAI+A QLG+ T  +E + ALGGTCLN+GCIPSKAL+H +  +H+A      +  G+  +S  +D+   +A KD  V  LT G+  L KK+ V  V G+ + +   +V VD        ++ +++++ATGS    LP + +    ++SST ALA   +P+ LVV+G GY
Sbjct:   21 AAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD-----GQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAPKALPQHLVVVGGGY 182          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAI (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lpdA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 65/166 (39.16%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA + A LGL T  IE+   LGG CLNVGCIPSK LLH + +  EA     + GV F+  ++D+  +   K   V+ LT G+  + KK K+   +G+  F +   + V   E   T+    N IIATGS    +P I  D+ RI  ST AL+L ++P   ++IG+G
Sbjct:   21 AAFRCADLGLDTVLIERYDKLGGVCLNVGCIPSKTLLHIAKVIKEAKELHKT-GVSFNKPDIDIKKIKNWKQHIVNKLTDGLSSMRKKRKIRIFQGHAIFETDKSLCVTNTEDKFTIF-FDNAIIATGSKPIKIPSIPHDDIRIWDSTDALSLKKIPNNFLIIGSG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 64/166 (38.55%), Postives = 95/166 (57.23%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAI AA+ GLKT CI ++  LGG C+N GCIP+KALL S+ ++  A +   + GV   +V  DL   + +        ++G+  L KK  V  + G       + V V   +G   ++  KNII+ATGS  + +PG+  D K+I++S  AL L EVPK ++V+G G
Sbjct:   25 AAIHAARYGLKT-CIVEKAVLGGVCVNWGCIPTKALLRSAEVFDLAKNP-ETFGVNVGNVSFDLAQAVKRSRNVALKSSKGVAYLLKKAAVEVLAGEAVLTGGAGVMVTMPDGSVRMLGAKNIIVATGSTPRVIPGLEPDGKKIITSREALILKEVPKSMIVVGGG 188          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 63/166 (37.95%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAG 180          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 63/166 (37.95%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AAI+AAQLGL T  +E +   GG CLNVGCIPSKALL ++ + H       + G+    V  D      +  K       G+  L KKNK+T + GYG F   + + VD  +GG   V   N IIATGS  + +PG ++    +V+    +   E+PK +++ GAG
Sbjct:   18 AAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSL-SANVVTYEEQILSRELPKSIIIAGAG 180          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 59/166 (35.54%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G+K  C+ ++ +LGG C+N GCIP+KALL S+ +Y  A +  +  GV  S +  DL   + +  K     ++G+E + KK KV   +G         V V   +G    ++  NII+ATG+  + +PG+  D K+I++S  AL L +VP+ ++V+G G
Sbjct:   25 AALHAARHGMKV-CLVEKASLGGVCVNWGCIPTKALLRSAEVYDLAKNP-SEFGVNVSELSFDLAQAVKRSRKVSLKSSKGVEFMLKKAKVEVWRGEAVLTGSKGVKVTAEDGSERSLEAANIIVATGAQPRVIPGLEPDGKKIITSREALILKDVPESMIVVGGG 188          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_THESC (Dihydrolipoyl dehydrogenase OS=Thermus scotoductus GN=lpd PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE-VPKELVVIGAG 715
            AAI+ AQLGLK   +E    +GG CLNVGCIP+KALLH++   H  +      G+K +  E+DL  + A +D  V  LT G+ GL K NKV  ++G+  F  P E+ V+    G T    ++ IIATGS+   L G    E  +  ST AL + E +PK L+VIG G
Sbjct:   18 AAIRGAQLGLKVLAVEA-AEVGGVCLNVGCIPTKALLHAAETVHH-LKGAEGFGLK-AKPELDLKKLGAWRDGVVKKLTGGVAGLLKGNKVELLRGFARFKGPREIEVN----GET-YGAQSFIIATGSEPMPLKGFPFGED-VWDSTRALRVEEGIPKRLLVIGGG 175          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 71/169 (42.01%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSV-DTIEG-GNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            AAI+AAQ G+ TT +EK  A GGTCLN GCIPSKAL+  +++ HEA ++    G+    V VD+  +   K   V  LT G+E L K N V  V+G   F   + V +    EG G+  ++ ++ IIATGS V  +PG    ++ + SS  AL  + VP+ LVV+G GY
Sbjct:   24 AAIRAAQNGIDTTLVEK-DAYGGTCLNYGCIPSKALITGANLAHEAGNA-EEMGIHADPV-VDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSETIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVPERLVVVGGGY 189          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 63/166 (37.95%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA + A LGL+T  IE +  LGG CLNVGCIPSK+LLH + +  +A    +  GV F+   +D+  +   K+K +  LT G+  + +K KV  V+G   F +   V V   +   T+   K+ IIATGS    +P +  ++ RI +ST AL+L  +P   ++IG G
Sbjct:   21 AAFRCADLGLETVLIEHQERLGGVCLNVGCIPSKSLLHIAKIIKDA-SELSESGVFFNKPIIDIKKINNWKEKIIKKLTTGLSNMGEKRKVRIVQGKALFNTDHSVLVKNKKNDFTIF-FKHAIIATGSKPIKIPSLPNEDNRIWNSTDALSLKSIPNRFLIIGGG 184          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
DLDH_HALSA4.785e-2539.77Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]
DLDH1_PSEPU8.163e-2539.05Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH_BUCAI5.291e-2439.16Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_CHLTE6.910e-2438.55Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_MYCTU2.011e-2337.95Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO2.011e-2337.95Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH_CHLP82.626e-2335.54Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH_THESC3.429e-2342.51Dihydrolipoyl dehydrogenase OS=Thermus scotoductus... [more]
DLDH_HALVO3.429e-2342.01Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH_BUCAP4.479e-2337.95Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]

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Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
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