FC929956

Overview
NameFC929956
Unique NameFC929956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13004 contig Ccv1_Contig13004:36..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TRXR1_BOVIN (Thioredoxin reductase 1, cytoplasmic OS=Bos taurus GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  254 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G     +V+ D   M       + +L  G     ++ KVTY   YGEF+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P + +V+GA Y
Sbjct:   47 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASY 200          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TRXR1_MOUSE (Thioredoxin reductase 1, cytoplasmic OS=Mus musculus GN=Txnrd1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 49/156 (31.41%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  254 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            T +  R  LGGTC+NVGCIP K L+H + +  +A+    ++G K   +V+ D   M       + +L  G     ++ KV Y   YG FI P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P + +V+GA Y
Sbjct:  161 TPLGTRWGLGGTCVNVGCIPKK-LMHQAALLGQALKDSRNYGWKVEDTVKHDWEKMTESVQSHIGSLNWGYRVALREKKVVYENAYGRFIGPHRIVATNNKGKEKIYSAERFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASY 314          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_ECOLI (Glutathione reductase OS=Escherichia coli (strain K12) GN=gor PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 50/167 (29.94%), Postives = 83/167 (49.70%), Query Frame = 2
Query:  227 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +AA  G K   IE +  LGGTC+NVGC+P K + H++ +  EA+H +   +G   +  + +   ++A +   +  +    E +  KN V  +KG+  F     V   T+E     +   +I+IATG       +PG+       + S G  AL  +P+ + V+GAGY
Sbjct:   22 RAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQI-REAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-----VDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYG----IDSDGFFALPALPERVAVVGAGY 177          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_YEAST (Glutathione reductase OS=Saccharomyces cerevisiae GN=GLR1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 52/175 (29.71%), Postives = 84/175 (48.00%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-----FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV---KSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +A +AA  G KT  +E + ALGGTC+NVGC+P K + ++S +     H+     + +  +    +  + P    ++D  V  L    +   +K KV  V G+  F     V V   +    V    +I++ATG      +++PG  +       S G   L E PK++VV+GAGY
Sbjct:   38 SARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELG----TDSDGFFRLEEQPKKVVVVGAGY 207          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_CANGA (Glutathione reductase OS=Candida glabrata GN=GLR1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 55/172 (31.98%), Postives = 81/172 (47.09%), Query Frame = 2
Query:  227 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSF---ASHGVKFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSD---VKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +AA  G KT  IE + ALGGTC+NVGC+P K + ++S +     H+     +  V  S  S+  + P    ++D  +  L    E   KK  V  V G+ +F     V V   +    V     I++ATG      + +PG  +       S G   L E PK++VV+GAGY
Sbjct:   34 RAASYGAKTLLIEGK-ALGGTCVNVGCVPKKVMWYASDLATRLTHAHEYGLAQNVPLSKESITFNWPEFKKKRDAYIHRLNGIYENNLKKEGVEVVFGWAKFNKDGNVEVTKHDNTTEVYSADRILVATGGKPVYPEKVPGFELG----TDSDGFFRLEEQPKKVVVVGAGY 200          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: TRXR1_PIG (Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  254 TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            T +  R  LGGTC+NV CIP K L+H + +  +A+    ++G     +++ D   M       + +L  G     ++ KVTY   YG+F+ P  +     +G   +   +  +IATG   + L GI  D++  +SS    +L   P + +V+GA Y
Sbjct:   47 TPLGTRWGLGGTCVNVSCIPKK-LMHQAALLGQALRDSRNYGWNVEETIKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAEKFLIATGERPRYL-GIPGDKEYCISSDDLFSLPYCPGKTLVVGASY 200          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_SERP5 (Soluble pyridine nucleotide transhydrogenase OS=Serratia proteamaculans (strain 568) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 45/166 (27.11%), Postives = 81/166 (48.80%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+   + G +   IE+   +GG C + G IPSKAL H+     E   +   +  +  ++    P ++   D  ++  TR  +G +++N+     G   FI  + VSV  ++G    ++  +I+IA GS   +   +  +  RI +S   L LN  P+ +++ GAG
Sbjct:   21 AAMGLVKQGARVAVIERYNNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYNNSR--TLSATFPDILRHADNVINQQTRMRQGFYERNQCKLFAGDARFIDANTVSVSYMDGTQDTIRADHIVIACGSRPYNPSSVDFNHPRIYNSDSILELNHEPRHVIIYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: STHA_PSEF5 (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=sthA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 56/170 (32.94%), Postives = 77/170 (45.29%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH--MYHEAMHSFASHGVK--FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAG 715
            AA+ AA+ G K   ++ R  +GG C ++G IPSKAL HS    M       F + G    FS      P ++   +K +S       G + +N+V    G G F     V V    G    +  K+IIIATGS       I     RI  S   L+L   P++L+V GAG
Sbjct:   20 AAMNAAKAGRKVAMVDSRRQVGGNCTHLGTIPSKALRHSVRQIMQFNTNPMFRAIGEPRWFS-----FPDVLKSAEKVISKQVASRTGYYARNRVDVFFGTGSFADEQTVEVVCANGVVEKLVAKHIIIATGSRPYRPADIDFSHPRIYDSDTILSLGHTPRKLIVYGAG 184          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_HUMAN (Glutathione reductase, mitochondrial OS=Homo sapiens GN=GSR PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 50/172 (29.07%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  218 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGS-----DVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +A +AA+LG +   +E    LGGTC+NVGC+P K + +++ ++ E MH  A +G      + +   +  ++D  VS L    +    K+ +  ++G+  F S  +    TIE         +I+IATG          +PG ++     ++S G   L E+P   V++GAGY
Sbjct:   79 SARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTA-VHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK---PTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASLG----ITSDGFFQLEELPGRSVIVGAGY 241          
BLAST of FC929956 vs. ExPASy Swiss-Prot
Match: GSHR_ASHGO (Glutathione reductase OS=Ashbya gossypii GN=GLR1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  227 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHS-----FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGEFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKELVVIGAGY 718
            +AA  G KT  IE + ALGGTC+NVGC+P K + ++S + H  +H+          +    +  +      +++  V  L    E    K  V YV G+  F S  +V V   +         +I+IATG +     GI   E   V S G   L E PK++V+ G+GY
Sbjct:   39 RAASYGAKTVLIEGK-ALGGTCVNVGCVPKKVMWYASDLAHRLLHARDYGLLQEVDISKEKLHFNWKEFAGKRNAYVERLNGIYERNLAKEGVEYVHGWARFNSEGQVEVTRPDQTTEKYTADHILIATGGEPVLPEGIPGAEYG-VDSDGFFRLEEQPKKVVISGSGY 205          
The following BLAST results are available for this feature:
BLAST of FC929956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
TRXR1_BOVIN3.437e-1531.41Thioredoxin reductase 1, cytoplasmic OS=Bos taurus... [more]
TRXR1_MOUSE1.706e-1431.41Thioredoxin reductase 1, cytoplasmic OS=Mus muscul... [more]
GSHR_ECOLI1.706e-1429.94Glutathione reductase OS=Escherichia coli (strain ... [more]
GSHR_YEAST2.228e-1429.71Glutathione reductase OS=Saccharomyces cerevisiae ... [more]
GSHR_CANGA2.910e-1431.98Glutathione reductase OS=Candida glabrata GN=GLR1 ... [more]
TRXR1_PIG4.964e-1429.49Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa... [more]
STHA_SERP51.106e-1327.11Soluble pyridine nucleotide transhydrogenase OS=Se... [more]
STHA_PSEF51.106e-1332.94Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
GSHR_HUMAN1.106e-1329.07Glutathione reductase, mitochondrial OS=Homo sapie... [more]
GSHR_ASHGO1.106e-1331.36Glutathione reductase OS=Ashbya gossypii GN=GLR1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002C04EF PostHarvC1 Citrus clementina cDNA clone C34002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929956 ID=FC929956; Name=FC929956; organism=Citrus clementina; type=EST; length=718bp
AAACCAACAATTCAATCGATTGATTGGAGAAAAAGTTGATTGAAAAATGG
TGATGGCAAGTCTTGCAAGAAGAAAGGCGTACGTGCTGTCAAGGAATCTC
TCGAACTCGTCGAATGGTAATGTTTTCAAGTACAGTTTCTCGCTTACAAG
GGGCTTCGCTTCGGCATCTGATGAGAACGACGTCGTCGTCATCGGAGGTG
GACCTGGTGGTTACGTGGCCGCCATCAAGGCCGCCCAGCTTGGTCTCAAG
ACCACGTGCATCGAGAAGCGTGGGGCCCTCGGCGGCACGTGCCTTAACGT
CGGATGCATCCCCTCTAAGGCACTTCTTCATTCTTCCCACATGTACCATG
AAGCCATGCATTCTTTTGCCAGCCATGGTGTAAAGTTTTCTTCTGTTGAA
GTTGATTTGCCTGCTATGATGGCCCAAAAAGATAAAGCTGTGTCTAATCT
TACAAGAGGTATTGAAGGTCTATTCAAGAAGAACAAGGTAACCTATGTGA
AAGGATATGGCGAGTTTATCTCCCCATCTGAGGTCTCTGTGGACACCATT
GAAGGTGGAAACACTGTCGTGAAAGGCAAGAATATCATAATTGCTACTGG
TTCTGACGTTAAGTCTCTACCTGGGATCACCATTGATGAAAAGAGAATTG
TGTCATCCACTGGAGCTTTAGCATTGAATGAAGTTCCTAAAGAACTCGTG
GTCATTGGGGCAGGCTAC
back to top