FC929962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16 Identity = 63/220 (28.64%), Postives = 107/220 (48.64%), Query Frame = 1 Query: 67 LGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAP-QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGM 708 + +R L ++F+ AF + L +D + S ++ +E + PR + ++ F D +L MG+ L G AP Q + + E+ R + ++L I + +GS QK KY+P L SG+ +G ++EPN GS+ GM+ KA D Y +NG+K W +N PV+ +VV+A++ A+ N+ I +E+GM Sbjct: 12 IASRGLSSTFYQD------AFQLSDQLTEDER-SLMLSAREYCQERLLPRVTEAYRTEKF--DPSLIPEMGSMGLLG--APYQGYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARS----ARHNNKIKGFILERGM 216
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_RAT (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16 Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 1 Query: 175 ESVGQFARENIAPRAAKIDQSNSFPQDVNLWKL-------MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK 666 E QF +E + P A ++ N ++ +L K+ + G+ P E + E + V ++ GAH ++ ++ +G+ AQK+KYLP++ SG+ + A ++EP++GSDV ++ A G Y +NG+K+W +NG +A V+AKT IK Sbjct: 96 EGQTQFLKELVGPVARFFEEVNDPAKNDSLEKVEEDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQKEKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIK 268
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_BOVIN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16 Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 1 Query: 73 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFAR--ENIAPRAAKIDQSNSFPQD-VNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI 663 ++S F + F S+L +D KE VG R E + AAK D + + K +G F G+ P E + +E + VG+ GAH ++ ++ G+ AQK+KYLPKL SGE + A ++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + Sbjct: 70 SKSFAVGTFKGQLTTDQVFPYPSVLNEDQTQFLKELVGPVTRFFEEVND-AAKNDMLERVEETTMQGLKELGAF---GLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPV 267
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_MOUSE (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15 Identity = 49/173 (28.32%), Postives = 86/173 (49.71%), Query Frame = 1 Query: 175 ESVGQFARENIAPRAAKIDQSNSFPQDVNLWKL-------MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK 666 E QF +E + P A ++ N ++ L K+ + G+ P E + E + V ++ GAH ++ ++ +G+ AQ++KYLP++ SG+ + A ++EP++GSDV ++ A G Y +NG+K+W +NG +A V+AKT IK Sbjct: 97 EEQAQFLKELVGPVARFFEEVNDPAKNDALEKVEDDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIK 269
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_MACFA (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 295 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI 663 G+ P E + +E + +VG++ GAH ++ ++ G+ AQK+KYLPKL SGE + A ++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + Sbjct: 143 GLQVPSELGGVGLCNTQYARLVEIVGMHDLAVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETLAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPV 267
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 60/195 (30.77%), Postives = 90/195 (46.15%), Query Frame = 1 Query: 85 CASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660 C + TK S + Q +F+ +FARE I P A D+S +P + W+L G N H P+ C+ EE+ A G G+ +N L ++ G+ QK KYL ++ + A ++EP+AGSDV G+K KA++ Y+ING KMW TNG A V +++ Sbjct: 20 CRAQHTKPSLKQEPGLGFSFELTEQQKEFQTIARKFAREEIIPVAPDYDKSGEYPFPLIKRAWEL-GLINTH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAGIKTKAEKKGDEYVINGQKMWITNGGKANWYFVLTRSN 208
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15 Identity = 61/199 (30.65%), Postives = 95/199 (47.74%), Query Frame = 1 Query: 91 SFFTKKQKHSAAFSST------SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660 S F + +HS A S + Q +F+ + +FARE I P A + D+S +P + W+L G N H P+ C+ EE+ A G G+ +N L ++ G+ QK KYL ++ + A ++EP+AGSDV +K KA++ Y+ING KMW TNG A + A+++ Sbjct: 16 SHFECRTQHSKAAHKQEPGLGFSFELTEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWEL-GLINAH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARSN 208
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADL_MACFA (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADL PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15 Identity = 48/183 (26.23%), Postives = 100/183 (54.64%), Query Frame = 1 Query: 169 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQ--RNHSIF-IEKGM 708 F++S+ +F +E + P ++ +++ ++V W+ G L G+ + + EE + ++ S G + HS + ++ + +GS Q ++P++ +G+ +GA+AM+E AGSD+ G+K A + +I+NG+K++ +NG ++ ++V A T+ + R S+F +E GM Sbjct: 60 FRKSIRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYYAAVVWEEQAYSNCS-GPGFSVHSGIVMSYITNYGSEEQIKHFIPQMTAGKCIGAIAMTELGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLSDVVIVVAVTNHEAPSPARGISLFLVENGM 239
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_BOVIN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15 Identity = 51/185 (27.57%), Postives = 90/185 (48.65%), Query Frame = 1 Query: 160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGM 708 ++ +++ + +E + PR +++ F +++ MG + G T Q + + E+ R + S+L + + +GS QK KYLP+L GE +G ++EPN GSD GM+ +A + YI++G+K W TN PVA L+V+A+ + + +EKGM Sbjct: 64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SEMGELGMLGPTI-QGYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWARCEDSCIR---GFLLEKGM 242
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15 Identity = 56/185 (30.27%), Postives = 93/185 (50.27%), Query Frame = 1 Query: 124 AFSSTSLLFD--DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQ---EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS-NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660 A S + FD +TQ + +++ +F+++ + P AAK D+S FP W+++ + G+ PQ + + +E +S G G+ G +L I + G+ QK KYL L + + + ++EP AGSDV G+K K ++ YIING+K W T G A+ V A++D Sbjct: 21 ATQSRQISFDLSETQKEIQDAALKFSKDVLVPNAAKFDESGEFP-----WEIVRQAHSLGLMNPQIPEKYGGPGMTTLETALIVEALSY--GCTGIQLGIMGPSLAIAPVYISGNEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTKCEKKGDEYIINGSKAWITGGGHAKWFFVLARSD 198 The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bpback to top |