FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_CAEEL (Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 63/220 (28.64%), Postives = 107/220 (48.64%), Query Frame = 1
Query:   67 LGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAP-QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSI---FIEKGM 708
            + +R L ++F+        AF  +  L +D +     S  ++ +E + PR  +  ++  F  D +L   MG+  L G  AP Q           + +   E+ R       +    ++L I  +  +GS  QK KY+P L SG+ +G   ++EPN GS+  GM+ KA  D     Y +NG+K W +N PV+  +VV+A++    A+ N+ I    +E+GM
Sbjct:   12 IASRGLSSTFYQD------AFQLSDQLTEDER-SLMLSAREYCQERLLPRVTEAYRTEKF--DPSLIPEMGSMGLLG--APYQGYGCAGTSTVGYGLIAREVERVDSGYRSTMSVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMETKATWDETTKTYKLNGSKTWISNSPVSDVMVVWARS----ARHNNKIKGFILERGM 216          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_RAT (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 1
Query:  175 ESVGQFARENIAPRAAKIDQSNSFPQDVNLWKL-------MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK 666
            E   QF +E + P A   ++ N   ++ +L K+       +      G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQK+KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT IK
Sbjct:   96 EGQTQFLKELVGPVARFFEEVNDPAKNDSLEKVEEDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQKEKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIK 268          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_BOVIN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 61/202 (30.20%), Postives = 95/202 (47.03%), Query Frame = 1
Query:   73 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFAR--ENIAPRAAKIDQSNSFPQD-VNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI 663
            ++S     F  +      F   S+L +D     KE VG   R  E +   AAK D      +  +   K +G F   G+  P E          +   +E +      VG+  GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +
Sbjct:   70 SKSFAVGTFKGQLTTDQVFPYPSVLNEDQTQFLKELVGPVTRFFEEVND-AAKNDMLERVEETTMQGLKELGAF---GLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPV 267          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_MOUSE (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 49/173 (28.32%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  175 ESVGQFARENIAPRAAKIDQSNSFPQDVNLWKL-------MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK 666
            E   QF +E + P A   ++ N   ++  L K+       +      G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQ++KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT IK
Sbjct:   97 EEQAQFLKELVGPVARFFEEVNDPAKNDALEKVEDDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIK 269          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADV_MACFA (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  295 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDI 663
            G+  P E          +   +E +     +VG++ GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +
Sbjct:  143 GLQVPSELGGVGLCNTQYARLVEIVGMHDLAVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETLAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPV 267          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 60/195 (30.77%), Postives = 90/195 (46.15%), Query Frame = 1
Query:   85 CASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            C +  TK           S    + Q +F+    +FARE I P A   D+S  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV G+K KA++    Y+ING KMW TNG  A    V  +++
Sbjct:   20 CRAQHTKPSLKQEPGLGFSFELTEQQKEFQTIARKFAREEIIPVAPDYDKSGEYPFPLIKRAWEL-GLINTH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAGIKTKAEKKGDEYVINGQKMWITNGGKANWYFVLTRSN 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 61/199 (30.65%), Postives = 95/199 (47.74%), Query Frame = 1
Query:   91 SFFTKKQKHSAAFSST------SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            S F  + +HS A          S    + Q +F+ +  +FARE I P A + D+S  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV  +K KA++    Y+ING KMW TNG  A    + A+++
Sbjct:   16 SHFECRTQHSKAAHKQEPGLGFSFELTEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWEL-GLINAH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARSN 208          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADL_MACFA (Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADL PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 48/183 (26.23%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  169 FKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQ--RNHSIF-IEKGM 708
            F++S+ +F +E + P  ++ +++    ++V  W+  G   L G+   +             +  EE + ++ S G  +  HS + ++ +  +GS  Q   ++P++ +G+ +GA+AM+E  AGSD+ G+K  A +    +I+NG+K++ +NG ++  ++V A T+ +     R  S+F +E GM
Sbjct:   60 FRKSIRKFFQEEVIPHHSEWEKAGEVSREV--WEKAGKQGLLGVNIAEHLGGIGGDLYYAAVVWEEQAYSNCS-GPGFSVHSGIVMSYITNYGSEEQIKHFIPQMTAGKCIGAIAMTELGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLSDVVIVVAVTNHEAPSPARGISLFLVENGM 239          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_BOVIN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 51/185 (27.57%), Postives = 90/185 (48.65%), Query Frame = 1
Query:  160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGM 708
            ++  +++   + +E + PR    +++  F +++     MG   + G T  Q           + +   E+ R       +    S+L +  +  +GS  QK KYLP+L  GE +G   ++EPN GSD  GM+ +A  +     YI++G+K W TN PVA  L+V+A+ +    +      +EKGM
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SEMGELGMLGPTI-QGYSCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNHGSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWARCEDSCIR---GFLLEKGM 242          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACADM_CAEEL (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T08G2.3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 56/185 (30.27%), Postives = 93/185 (50.27%), Query Frame = 1
Query:  124 AFSSTSLLFD--DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQ---EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHS-NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            A  S  + FD  +TQ + +++  +F+++ + P AAK D+S  FP     W+++   +  G+  PQ   +            + +E +S   G  G+  G    +L I  +   G+  QK KYL  L +   + +  ++EP AGSDV G+K K ++    YIING+K W T G  A+   V A++D
Sbjct:   21 ATQSRQISFDLSETQKEIQDAALKFSKDVLVPNAAKFDESGEFP-----WEIVRQAHSLGLMNPQIPEKYGGPGMTTLETALIVEALSY--GCTGIQLGIMGPSLAIAPVYISGNEEQKKKYLGALAAEPIIASYCVTEPGAGSDVNGVKTKCEKKGDEYIINGSKAWITGGGHAKWFFVLARSD 198          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
GCDH_CAEEL3.084e-1628.64Probable glutaryl-CoA dehydrogenase, mitochondrial... [more]
ACADV_RAT5.261e-1628.90Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_BOVIN5.261e-1630.20Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_MOUSE1.531e-1528.32Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_MACFA1.999e-1533.60Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_RAT1.999e-1530.77Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_MOUSE1.999e-1530.65Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADL_MACFA3.410e-1526.23Long-chain specific acyl-CoA dehydrogenase, mitoch... [more]
GCDH_BOVIN4.453e-1527.57Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos t... [more]
ACADM_CAEEL4.453e-1530.27Probable medium-chain specific acyl-CoA dehydrogen... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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