FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDSB_DICDI (Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 55/188 (29.26%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  136 TSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            T+L  ++T L  KE+V  FA E + P    +D+++   +   L K + + NL GI                 IA+EE+++   ++ +     + L  N + R+GS  Q++KYL  L +   VG+  +SE  +GSD   +  +A R  DG +++NG K W TN   A   +V A  D     +  + FI
Sbjct:   33 TTLSEEETLL--KETVANFANEKVRPLVKVMDETSELNK--GLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELAKVDPAISVIVDVQNTLVNNCINRYGSIQQREKYLSMLATNT-VGSFCLSESGSGSDAFALATRAVRQSDGTFVLNGTKQWITNAKEAGVFIVMANVDPSQGYKGITAFI 215          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 55/177 (31.07%), Postives = 79/177 (44.63%), Query Frame = 1
Query:  166 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFI 696
            + + ++   A + IAP AA +DQ   FP++         FN   I  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD        S FI
Sbjct:   21 ELRATIRALAEKEIAPHAADVDQRARFPEEALAALNASGFN--AIHVPEEYGGQGADSVAACIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNGFKCWITNGGKSTWYTVMAVTDPDKGANGISAFI 194          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 50/165 (30.30%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  166 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            + + ++   A + IAP AA++D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTD 182          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 50/165 (30.30%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  166 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 660
            + + ++   A + IAP AA++D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTD 182          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACAD8_DICDI (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=acad8 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 50/187 (26.74%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  154 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHS-IFIEKGMP 711
            + Q QF+     FA+E + P A K D+   FP+DV   +        GI   ++            I +E ++ A  S       H N+C   +  +G+  Q+ K+LP L+S E + +  ++EP +GSD   +  KA +    YI+NG+K + + G  ++  +V  +T  +   +  S + +EK  P
Sbjct:   41 EDQKQFQSMALDFAQEKMKPFAEKWDKEEYFPRDV--MREAAELGFGGIYVREDVGGSGLSRLDASIIIEALASADVSTTAFISIH-NMCAGLIDIYGTEEQRKKFLPSLVSMEKIASYCLTEPGSGSDAGSLSTKATKDGDHYILNGSKAFISGGGDSEVYLVMVRTGAEKGPKGISCLLVEKDTP 224          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_MACFA (Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 49/185 (26.49%), Postives = 87/185 (47.03%), Query Frame = 1
Query:  160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGM 708
            ++  +++   + +E + PR    +++  F +++     MG   + G T                +A  E+ R       +    S L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +     R     +EKGM
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SQMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE---DGRIRGFLLEKGM 242          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 48/185 (25.95%), Postives = 88/185 (47.57%), Query Frame = 1
Query:  160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGM 708
            ++  +++   + +E + PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +    +      +EKGM
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIR---GFLLEKGM 242          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  346 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK 654
            + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP+ GSD  G+   A +V+GG+ ING K W  N   A  L+++A+
Sbjct:  118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR 220          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_MOUSE (Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 1
Query:  364 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGM 708
            E+ R            S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN GSD  GM+ +A  +  +  Y ++G K W TN PVA   +V+A+ +           +EKGM
Sbjct:  129 ELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWARCEDNCIP---GFILEKGM 242          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 49/186 (26.34%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  160 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD-KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGM 708
            ++  +++   + +E++ PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+  KYLP+L  GE +G   ++EPN GSD   M+ +A  +  +  Y +NG K W TN PVA   VV+A+ +    +      +EKGM
Sbjct:   33 EILIRDTFRTYCQEHLMPRIVLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWARCEDNCIR---GFLLEKGM 212          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ACDSB_DICDI7.596e-1529.26Probable short/branched chain specific acyl-CoA de... [more]
ACDP_MYCLE2.210e-1431.07Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCTU4.924e-1430.30Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCBO4.924e-1430.30Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACAD8_DICDI6.431e-1426.74Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dic... [more]
GCDH_MACFA1.433e-1326.49Glutaryl-CoA dehydrogenase, mitochondrial OS=Macac... [more]
GCDH_HUMAN3.192e-1325.95Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]
ACOX4_ARATH3.192e-1338.83Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
GCDH_MOUSE2.069e-1233.33Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus m... [more]
GCDH_PIG7.861e-1226.34Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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