FC929962

Overview
NameFC929962
Unique NameFC929962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1870 contig Ccv1_Contig1870:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACAD8_BOVIN (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACAD8 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 48/191 (25.13%), Postives = 79/191 (41.36%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGMP 711
            S+   + Q +F++    FA   +AP  A+ DQ   FP D    +        G+    +            I  E ++    S       H N+C+  + R GS  Q+ +  P L + E   +  ++EP +GSD   +   A R    YI+NG+K + + G  A   VV  +T     +    + +EKG P
Sbjct:   39 SMGLSEEQKEFQKVAFNFAAREMAPHMAEWDQKELFPVDT--MRKAAQLGFGGVYVQTDVGGAGLSRLDTSIIFEALATGCTSTTAYMSIH-NMCVWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQHDHYILNGSKAFISGGGEADIYVVMCRTGGPGPRGISCVVVEKGTP 226          
BLAST of FC929962 vs. ExPASy Swiss-Prot
Match: ACAD8_MOUSE (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acad8 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 48/191 (25.13%), Postives = 80/191 (41.88%), Query Frame = 1
Query:  139 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKLAQRNHSIFIEKGMP 711
            SL  ++ Q  F++    FA   +AP  A+ DQ   FP DV   +        G+    +            +  E ++    S       H N+C   +   G+  Q+ K+ P L + E   +  ++EP +GSD   +   A +    YI+NG+K + + G  +   VV  +T    A+    I +EKG P
Sbjct:   36 SLGLNEEQKGFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKAFISGGGESDIYVVMCRTGGSGAKGISCIVVEKGTP 223          
The following BLAST results are available for this feature:
BLAST of FC929962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ACAD8_BOVIN3.901e-1125.13Isobutyryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
ACAD8_MOUSE5.095e-1125.13Isobutyryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC34002C10EF PostHarvC1 Citrus clementina cDNA clone C34002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929962 ID=FC929962; Name=FC929962; organism=Citrus clementina; type=EST; length=714bp
GAAAACACAAAGAGAGGAGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAG
AAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTA
CGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTT
GATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGA
AAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTCCCAC
AGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATA
ACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATCATTG
CATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTT
ACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGGAAGC
CCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGT
AGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCA
TGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAAC
AAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGC
AAAAACAGACATTAAGCTGGCTCAAAGGAATCACAGCATTTTCATAGAGA
AAGGAATGCCGGAT
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