FC929969

Overview
NameFC929969
Unique NameFC929969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15073 contig Ccv1_Contig15073:1..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSESM (3-dehydroquinate synthase OS=Pseudomonas syringae pv. tomato GN=aroB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.979e-32
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++V+LG+RSYPI+IG GLLD P+LL  H+ G++V +V+N TVAPLYL+++T  L   N    V  ++LPDGE +KN +TL  +FD  + +R DRR T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVELGERSYPIHIGEGLLDQPELLAPHIVGRQVAIVSNTTVAPLYLERLTQTLAGYN----VLPIVLPDGEAFKNWETLQTIFDGLLTARHDRRTTVIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSE14 (3-dehydroquinate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=aroB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.979e-32
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++V+LG+RSYPI+IG GLLD P+LL  H+ G++V +V+N TVAPLYL+++T  L   N    V  ++LPDGE +KN +TL  +FD  + +R DRR T +ALGGGVIGDM G+AAA Y RGV
Sbjct:    4 LKVELGERSYPIHIGEGLLDQPELLTPHIVGRQVAIVSNTTVAPLYLERLTQTLAGYN----VLPIVLPDGEAFKNWETLQTIFDGLLTARHDRRTTVIALGGGVIGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_VESOH (3-dehydroquinate synthase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=aroB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 1
Query:  241 IVEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            I+ +DLG +SYPIYIG  LL   +LL KH+ GK+V++VTN TVAPLYL KV + L     +     VILPDGE YK +DT+  +F   +E R DR CT +ALGGGV+GDM G+ AASY RGV
Sbjct:    3 ILNLDLGYKSYPIYIGQNLLLKGELLTKHISGKQVMIVTNTTVAPLYLKKVQNLLL----SFEFAQVILPDGEKYKTLDTVNCIFSALLEKRFDRSCTLIALGGGVVGDMTGFVAASYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RUTMC (3-dehydroquinate synthase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=aroB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 67/121 (55.37%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            + +DL ++SYPIYIG  LL    LL KH+ GK+V++VTN TVAPLYL+KV + L     +     VILPDGE YK +DTL  +F+  +++R DR CT +ALGGGV+GDM G+AAASY RGV
Sbjct:    4 LNLDLQEKSYPIYIGQDLLSEGKLLTKHISGKQVMIVTNTTVAPLYLEKVQNLLL----SFEFAQVILPDGEKYKTLDTLNCIFNALLKNRFDRSCTLIALGGGVVGDMTGFAAASYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_PSEU5 (3-dehydroquinate synthase OS=Pseudomonas stutzeri (strain A1501) GN=aroB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.082e-32
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPI+IG  L+D  DL    ++G++V +VTN TVAPLYLD++T  L+      SV  +ILPDGE++KN +TL  +FD  + +R DR  T VALGGGVIGDM G+AAASY RGV
Sbjct:    4 LQVDLGERSYPIHIGERLIDRSDLFASKIRGRQVAIVTNETVAPLYLDRLTSTLS----GYSVTPIILPDGESHKNWETLQLIFDALLGARHDRNTTVVALGGGVIGDMAGFAAASYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_THISH (3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.637e-32
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  250 VDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V+LG RSYPI+IG GLLD P      ++GK+V++VTN TVAPLYLD+    L R   +  VE VILPDGE YK M+TL +V+   +E+R DR+ T VALGGGVIGD+ G+AAASY RGV
Sbjct:    6 VELGDRSYPIHIGRGLLDDPTRFAPRIRGKRVMIVTNETVAPLYLDR----LKRTLGDFRVEAVILPDGEEYKTMETLNQVYTALLEARFDRKATLVALGGGVIGDITGFAAASYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_AZOVD (3-dehydroquinate synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=aroB PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.637e-32
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            ++VDLG+RSYPIYIG+GLLD  + +  H+ G++V VVTN TVAPLYL++++  L        +  ++LPDGE +K+ +TL K+FD  +E+R DRR T +ALGGGV+GDM G+AAA Y RGV
Sbjct:    4 LQVDLGERSYPIYIGAGLLDRAECMVPHLAGRQVAVVTNETVAPLYLERLSQTLA----GHELTPIVLPDGEAFKHWETLQKIFDGLLEARHDRRTTLIALGGGVVGDMAGFAAACYQRGV 120          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_CUPTR (3-dehydroquinate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=aroB PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.522e-31
Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +EVDLG+RSYPI+IGSGLLD+ +LL+ HV+G+  ++VTN TV PLY  +V  AL       +V  V LPDGE +K+ +TL ++FD  +++  DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 LEVDLGERSYPIHIGSGLLDNAELLRPHVRGQHAVIVTNETVGPLYAARVEQALAALGK--TVRTVTLPDGEAFKHWETLNRIFDALLQAGADRKTTLVALGGGVVGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RALPJ (3-dehydroquinate synthase OS=Ralstonia pickettii (strain 12J) GN=aroB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.302e-31
Identity = 64/121 (52.89%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            V+VDLG R+YPI+IGSGLL   +L   H++G + ++VTN TVAPLY  KV +A+   +   +V+ V+LPDGE++K  DTL ++FD  + +  DR+ T +ALGGGVIGDM G+AAA Y+RGV
Sbjct:    4 VDVDLGDRAYPIHIGSGLLSKAELFAPHIRGARAVIVTNETVAPLYAAKVEEAIR--SLGKAVDTVVLPDGESFKKWDTLNRIFDALLTAGADRKTTLIALGGGVIGDMTGFAAACYMRGV 122          
BLAST of FC929969 vs. ExPASy Swiss-Prot
Match: AROB_RALEH (3-dehydroquinate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=aroB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.584e-31
Identity = 65/121 (53.72%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  244 VEVDLGQRSYPIYIGSGLLDHPDLLQKHVQGKKVLVVTNNTVAPLYLDKVTDALTRGNPNVSVENVILPDGENYKNMDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGV 606
            +EVDLG+RSYPI+IG+GLLD+ +LL+ HV+G+  ++VTN TV PLY  +V  AL       +V  V LPDGE +K+ +TL ++FD  +++  DR+ T VALGGGV+GDM G+AAA Y+RGV
Sbjct:    4 LEVDLGERSYPIHIGTGLLDNAELLRPHVRGQHAVIVTNETVGPLYAARVEAALAALGK--TVRTVTLPDGEAFKHWETLNRIFDALLQAGADRKTTLVALGGGVVGDMTGFAAACYMRGV 122          
The following BLAST results are available for this feature:
BLAST of FC929969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
AROB_PSESM2.979e-3255.373-dehydroquinate synthase OS=Pseudomonas syringae ... [more]
AROB_PSE142.979e-3255.373-dehydroquinate synthase OS=Pseudomonas syringae ... [more]
AROB_VESOH5.082e-3255.743-dehydroquinate synthase OS=Vesicomyosocius okuta... [more]
AROB_RUTMC5.082e-3255.373-dehydroquinate synthase OS=Ruthia magnifica subs... [more]
AROB_PSEU55.082e-3256.203-dehydroquinate synthase OS=Pseudomonas stutzeri ... [more]
AROB_THISH6.637e-3258.823-dehydroquinate synthase OS=Thioalkalivibrio sp. ... [more]
AROB_AZOVD6.637e-3253.723-dehydroquinate synthase OS=Azotobacter vinelandi... [more]
AROB_CUPTR2.522e-3154.553-dehydroquinate synthase OS=Cupriavidus taiwanens... [more]
AROB_RALPJ4.302e-3152.893-dehydroquinate synthase OS=Ralstonia pickettii (... [more]
AROB_RALEH9.584e-3153.723-dehydroquinate synthase OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionC34002D05EF PostHarvC1 Citrus clementina cDNA clone C34002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929969 ID=FC929969; Name=FC929969; organism=Citrus clementina; type=EST; length=607bp
ATCACGGCCAACTCATTCTCTCCTTCGCTGTCATCCAAACACGCGTCCAA
ACAGCCCGAGTTATATACCTGGTTTCGCAGCCCTAACGCGATTGCGCTTA
AGTCTCCGCCCTTGGCACCGGCTTCTATTGAGTTGAAACGGAACGGCGGT
TTCGTCCTGGGCCAGTATAAGGTGAACTGCAGGATATACGCGAGTAGTGC
GGCTCCGATGATGGATCAAACGGTTAGTAAAGCTCCTACGATTGTTGAGG
TGGATTTGGGACAGCGGAGCTACCCGATTTATATCGGATCCGGACTTCTG
GATCATCCCGACCTGCTCCAAAAGCATGTTCAAGGAAAGAAAGTTCTTGT
GGTTACTAACAACACAGTTGCACCATTGTACCTGGATAAAGTTACTGATG
CTTTGACAAGAGGGAATCCAAATGTTTCAGTTGAGAATGTGATTCTGCCA
GATGGTGAGAATTACAAGAACATGGATACTCTCATGAAAGTCTTTGACAA
GGCCATCGAGTCTCGGCTGGACCGGCGATGTACATTTGTTGCACTTGGAG
GTGGTGTTATTGGTGACATGTGTGGTTATGCTGCAGCCTCTTATCTTCGA
GGTGTTA
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