FC929975
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12 Identity = 64/213 (30.05%), Postives = 97/213 (45.54%), Query Frame = 2 Query: 62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHV 700 H S++ V + P + + T D+TVK+W D L+ T GH V SV+ P G I AS S D VR++ + ++A L V QF P G TL V+ ++LWD NLI +P + V W P+G +A + DGT+ ++ + + L GH V +V++P D + LFS+S + V Sbjct: 600 HTGSIYRVDFSPNGK----IFATAGQDQTVKIWDLDGNLLQ-TLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTL-VSVCRDGQIRLWD-LDGNLIRQFGLP-------------EVAFFGVNWHPNGNLLAVAADDGTVRLW-TPQGEIKATLSGHDEFVTRVVFTP-DGKQLFSSSSNGSV 790
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PF20_CHLRE (Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 50/174 (28.74%), Postives = 80/174 (45.98%), Query Frame = 2 Query: 173 MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694 + L +T GH L V ++A HP+ I +AS D +++ + I E V + F P GT LA +GGG ++VK+WD + T + K+ + SV + G +A GS+D T+ ++D+ K L GH V L + P + ++SD T Sbjct: 316 LSLNKTFKGHLLSVANLALHPTKPILVTASDDKTWKMWHMPGGDLIMCGEGHKDWVAGVDFHPAGTCLA-SGGGDSAVKIWDFEKQRCVTTFT-------------DHKQAIWSVRFHHLGEVVASGSLDHTVRLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKT 475
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12 Identity = 60/212 (28.30%), Postives = 94/212 (44.34%), Query Frame = 2 Query: 56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASD 688 + H ++V AV + P +LL +GS D TV LW T GH GV VA +P+G A+A+ D ++++D +T A + TL + V+ FD L +G +++LWD + + + P P V S A+S DG + S+DG I ++D L L + PV ++P VL + D Sbjct: 37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNTLD 231
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12 Identity = 56/198 (28.28%), Postives = 89/198 (44.95%), Query Frame = 2 Query: 119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 LLL+ S D T++LW T GH V V P G S S D R++ D+N ++ S+V +QF P +A G +V+LWD T + + + K V S+A+S GR +A GS+D I ++D++ + L H V ++ +S D VL +A D ++ ++D Sbjct: 464 LLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSNYVA-TGSSDRTVRLWDNMTGQSVRLM-------------TGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLRHTSTVTTITFSR-DGTVLAAAGLDNNLTLWD 646
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12 Identity = 61/222 (27.48%), Postives = 94/222 (42.34%), Query Frame = 2 Query: 47 SVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 ++ HEE V + + LL+TGS D T+K+W DD +++ T GH GV + G S S D V+V+ + + TL+ S V M T V G ++++WD T GL + V V + DG + G D T+ ++D K L L GH V SL+Y + ++ S S DT + ++D Sbjct: 251 AILRGHEEHV-----ITCMQIHNDLLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAM---ANTTLVTGSRDCTLRVWDIET-------------GLHVRTLQGHQAAVRCVQF--DGNIVVSGGYDFTVKIWDAFSGKCLRTLIGHSNRVYSLLYES-ERSIVCSGSLDTSIRVWD 448
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12 Identity = 58/233 (24.89%), Postives = 96/233 (41.20%), Query Frame = 2 Query: 5 GLCPPNQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 691 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D Sbjct: 252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYD 470
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 58/233 (24.89%), Postives = 96/233 (41.20%), Query Frame = 2 Query: 5 GLCPPNQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 691 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D Sbjct: 252 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYD 470
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 58/233 (24.89%), Postives = 96/233 (41.20%), Query Frame = 2 Query: 5 GLCPPNQMKFAGLKSVENAHEESVWAVTWVPAT----ETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 691 GLC + L H +V A+ + P + + + L + + D +VKLW D + GH + V V HPSG + D R++D++ I E V+ + F G +LA GG A ++WD T I L K + + +SP+G IA GS D T V+D+ + + ++ + H V + + P+ L + + D Sbjct: 253 GLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDG-SLAGTGGLDAFGRVWDLRTGRCIMFL-------------EGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYD 471
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 2 Query: 92 VPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGL-KPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 + A + + L LTG +D+TV L+ + Q+ +T GH + +V HP I A SAS DS +RV+ ++S A ++ + V T +++ G + D + W A I + L K + + S+ V S+ + PDG G+ D + ++D+ GH VRS+ +S + L + S+D V ++D Sbjct: 214 ITALDIKGNLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVLHPDNITAISASADSHIRVWSATDSSSKAIIDVHQAPV---------TDISLNASGDYILSASDDSYW---AFSDIRSGKSLCKVSVEPGSQIAVHSIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSE-NGYYLATGSEDGEVKLWD 408
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2 Query: 107 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694 T L++ GS ++++W + ++ RT GH + S+ HP G AS S D+ ++++D+ + V ++F P G LA A +VKLWD +++ P P V V + P+ +A GS D TI +D+ + + + +EG PVRS++++P D L+S D+ Sbjct: 73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253 HSP 2 Score: 69.3218 bits (168), Expect = 2.269e-11 Identity = 53/198 (26.77%), Postives = 89/198 (44.95%), Query Frame = 2 Query: 119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712 LL TG D V LW + + TGH V SV + + + S +RV+D++ + TL + + + F P G +A +G ++KLWD R +G + S+ V + +SPDG+ +A + D T+ ++D+T K + GH PV + + P + +L S S D + +D Sbjct: 35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWD 217 The following BLAST results are available for this feature:
BLAST of FC929975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 102
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929975 ID=FC929975; Name=FC929975; organism=Citrus clementina; type=EST; length=713bpback to top |