FC929975

Overview
NameFC929975
Unique NameFC929975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:158..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI---PRPEGLKPTDKSSSKK--FVLSVAWSPDGRRIACGSMDGTISVFDVTR 592
            +AH + V  V + P+T      +++ S D TVK+W   + +L  T  GH   V +VA  P G + AS   D  + ++D+     + +L+A  S +  + F P    L  A    +S+K+WD  + +++  L +      +     D ++ KK  +  S+ WS DG  +  G  DG + V+ + R
Sbjct:  146 DAHSDWVSCVRFSPSTPQ--PTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDA-GSIIHALCFSPNRYWLCAA--TESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGR 324          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PFS2_ASPOR (Polyadenylation factor subunit 2 OS=Aspergillus oryzae GN=pfs2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 60/224 (26.79%), Postives = 97/224 (43.30%), Query Frame = 2
Query:   44 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRI-ACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMY 709
            ++V +AH + + A     A       L++G     +K WRP+   +E  +  H   V  +A  PS     SAS D+ +++FD  +  +   L     +V    + P KG  L V+G     VK WD  T   + TL              S K  V +  +S   + + A  S D T  VFD+   + +  L GH  PV SL + P+   ++ + S+D  ++ Y
Sbjct:  133 ETVMDAHYDQLQAGVTSLAWSHSHDWLISGGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFLSASDDTTLKIFDFTSRTADTVLTGHNWDVKSCDWHPTKG--LLVSGSKDHQVKFWDPRTARCLTTLH-------------SHKNTVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILRGHEKPVSSLTWHPIHSSLISTGSEDGSLYHY 341          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: FBXW7_MOUSE (F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            H   VW+      ++ R  ++++GS D T+K+W  +  +   T  GH   V  +  H   ++  S S D+ +RV+D++T   +  L    + V  +Q+D +     V+G     VK+WD  T   + TL          T++  S +F        DG  +  GS+D +I V+DV     +H L GH      +    +   +L S + D+ V ++D
Sbjct:  342 HTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNADSTVKIWD 529          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: FBXW7_HUMAN (F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 56/217 (25.81%), Postives = 98/217 (45.16%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            H   VW+      ++ R  ++++GS D T+K+W  +  +   T  GH   V  +  H   ++  S S D+ +RV+D++T   +  L    + V  +Q+D +     V+G     VK+WD  T   + TL          T++  S +F        DG  +  GS+D +I V+DV     +H L GH      +    +   +L S + D+ V ++D
Sbjct:  420 HTGGVWS------SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR---RVVSGAYDFMVKVWDPETETCLHTLQ-------GHTNRVYSLQF--------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNADSTVKIWD 607          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 56/182 (30.77%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  167 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A  S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 56/182 (30.77%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  167 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A  S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H+++V  V + P+      LL +GS D+TV++W P+          H   V SV     G    +AS D  V+V+       + +L    + V   +F P G  L V+     +VKLWD  +   + +                   FV  V + P G  IA   MD T+ V+DV   + L H + H   V +L + P    ++ ++SD T
Sbjct:   60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKTSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASSDST 252          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
The following BLAST results are available for this feature:
BLAST of FC929975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GBLP_MEDSA2.269e-1127.17Guanine nucleotide-binding protein subunit beta-li... [more]
PRP19_RAT2.963e-1124.58Pre-mRNA-processing factor 19 OS=Rattus norvegicus... [more]
PRP19_MOUSE2.963e-1124.58Pre-mRNA-processing factor 19 OS=Mus musculus GN=P... [more]
PFS2_ASPOR2.963e-1126.79Polyadenylation factor subunit 2 OS=Aspergillus or... [more]
FBXW7_MOUSE2.963e-1125.81F-box/WD repeat-containing protein 7 OS=Mus muscul... [more]
FBXW7_HUMAN2.963e-1125.81F-box/WD repeat-containing protein 7 OS=Homo sapie... [more]
WD51B_PONAB3.870e-1130.77WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WD51B_HUMAN3.870e-1130.77WD repeat-containing protein 51B OS=Homo sapiens G... [more]
WD51A_BOVIN3.870e-1127.01WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
PRP19_HUMAN3.870e-1124.58Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC34002D11EF PostHarvC1 Citrus clementina cDNA clone C34002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929975 ID=FC929975; Name=FC929975; organism=Citrus clementina; type=EST; length=713bp
TGTAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATG
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