FC929975

Overview
NameFC929975
Unique NameFC929975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 56/175 (32.00%), Postives = 79/175 (45.14%), Query Frame = 2
Query:  188 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            T   H   V  +A HP+  + ASAS D+ V+++D +      TL+     V  + FDP+G  +A       ++KLWDTA             + L   D S     V SV + PDG  +   S D TI V+ V+    +    GH   VR  V S  D R L SAS+D    ++D
Sbjct:  100 TLASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATC-SSDLTLKLWDTAN-------QYTNVKTLHGHDHS-----VSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSE-DGRWLVSASNDQTSRIWD 260          

HSP 2 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD-VDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 661
            LL + S D TVKLW  +   +ERT  GH   V+ V   P G + A+ S D  ++++D  +   ++ TL      V  ++F P G TL V+     ++++W  ++   I T              S   ++V     S DGR +   S D T  ++D +  +    L GH   V   V++PV+
Sbjct:  119 LLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETL-VSASRDKTIRVWQVSSGYCIKTF-------------SGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVN 286          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  113 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 580
            P  L++GS D T+ LW P +D +     TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWDVKAQKLA-------------TDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 586
            H E V  V + P T T P ++++G  D+ VK+W   + +L+    GH   V +V   P G + AS   D    ++D+     + +L+A    +  + F P    L  A    +S+K+WD  + +++  L   RPE    T K +   + +S+AWS DG  +  G  DG I V+ V
Sbjct:  149 HTEWVSCVRFSPMT-TNP-IIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDA-GDVIHCLCFSPNRYWLCAA--TQSSIKIWDLESKSIVDDL---RPE-FNITSKKAQVPYCVSLAWSADGSTLYSGYTDGQIRVWAV 314          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 592
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA  S +  + F P    L  A      +K+WD  + +++  L +      +  D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 52/199 (26.13%), Postives = 94/199 (47.24%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYD 712
            L++ S D+T+K+W     +  +T  GH   V     +P   +  S S D  V++++V T   + TL A    +  + F+  G +L V+G      ++WD A+   + TL+    EG  P         V  V +SP+G+ I   ++D T+ ++D +R + L    GH      L   +S    + + S S+D  V++++
Sbjct:   96 LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWN 281          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 58/220 (26.36%), Postives = 89/220 (40.45%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP---------RPEG-----------LKPTDKSSSK---------KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            L +GS+D T+ +W           TGH   V  V   PSG + AS S D  VR++  +         A  + V  + F   G +L V      +VK+W T     + +L+            P+G           +K  DK+S +          FV  V + P G  IA   MD T+ V+D    + L H + H   V +L + P    ++ ++SD T
Sbjct:   34 LASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSL-VTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDST 252          

HSP 2 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 55/218 (25.23%), Postives = 93/218 (42.66%), Query Frame = 2
Query:   38 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 691
            G  +V  AH  +V +V +    ++    L+T S D+TVK+W     +   + T H   V      P G +  SAS D  V+++D  +   I +       V  + F P GT +A AG  + +VK+WD  T  L+    +                 V ++++ P G  +   S D T+ + D+   + L+ L GH  P  ++ +S          SD+
Sbjct:   94 GESTVFRAHTATVRSVHFCSDGQS----LVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDN-TVKVWDARTHRLLQHYQL-------------HSAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDE 293          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H+++V  V + P+      LL +GS D+TV++W P+          H   V SV     G    +AS D  V+V+       + +L    + V   +F P G  L V+     +VKLWD ++   + +                   FV  V + P G  IA   MD T+ V+DV   + L H + H   V  L + P    ++ ++SD T
Sbjct:   60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKSSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDST 252          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PHIP_MOUSE (PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-----KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H  SV+ VT+    +     + TGS D  VK+W  DD +L  T  GH   +  +A +    + A+ S D  +RV+ + T A +A L+   + +  +QF P     K    +    G+    LWD  T  +        P   K T++      ++  ++S  G  +A GS D  I V  F   + + +  LE H   V S+ +S    R +  + D T
Sbjct:  182 HLSSVYCVTF----DRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKI-------NPRPTKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGT 388          
BLAST of FC929975 vs. ExPASy Swiss-Prot
Match: PHIP_HUMAN (PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-----KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H  SV+ VT+    +     + TGS D  VK+W  DD +L  T  GH   +  +A +    + A+ S D  +RV+ + T A +A L+   + +  +QF P     K    +    G+    LWD  T  +        P   K T++      ++  ++S  G  +A GS D  I V  F   + + +  LE H   V S+ +S    R +  + D T
Sbjct:  182 HLSSVYCVTF----DRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKI-------NPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGT 388          
The following BLAST results are available for this feature:
BLAST of FC929975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
PRP19_BOVIN3.870e-1124.58Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
NUDF_CRYNE3.870e-1132.00Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
NLE1_MOUSE3.870e-1129.94Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
GBLP_CHLRE3.870e-1129.71Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH3.870e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
WDR5B_MOUSE5.054e-1126.13WD repeat-containing protein 5B OS=Mus musculus GN... [more]
WD51A_MOUSE5.054e-1126.36WD repeat-containing protein 51A OS=Mus musculus G... [more]
WD51A_HUMAN5.054e-1127.01WD repeat-containing protein 51A OS=Homo sapiens G... [more]
PHIP_MOUSE5.054e-1126.61PH-interacting protein OS=Mus musculus GN=Phip PE=... [more]
PHIP_HUMAN5.054e-1126.61PH-interacting protein OS=Homo sapiens GN=PHIP PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34002D11EF PostHarvC1 Citrus clementina cDNA clone C34002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929975 ID=FC929975; Name=FC929975; organism=Citrus clementina; type=EST; length=713bp
TGTAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATG
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