FC929976

Overview
NameFC929976
Unique NameFC929976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A4_HUMAN (Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 65/218 (29.82%), Postives = 102/218 (46.79%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHM----------INNSTTSQTILGFLSPKALYIWGCF-PFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGL-----VSTLVNVGLCVNLFLTF 697
            GR  VD  +V+ Q GFC  Y++F+A  +  +          I+NST S       S        CF PF + L  I  L +L  LS  A+ V +    +++ + V+ +M     L     +  +    G AV+AFEG+G++LPLE++ +  +RF + L   M  ++ LY +   LGY  F +E K  IT N    +     V  L + G+ V   + F
Sbjct:  151 GRSVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLESKVFISNSTNSSNPCERRSVDLRIYMLCFLPFIILLVFIRELKNLFVLSFLAN-VSMAVSLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMKESKRFPQALNIGMGIVTTLYVTLATLGYMCFHDEIKGSITLNLPQDVWLYQSVKILYSFGIFVTYSIQF 367          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A4_MOUSE (Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 64/218 (29.36%), Postives = 103/218 (47.25%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKA-----------LYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGL-----VSTLVNVGLCVNLFLTF 697
            GR  VD  +V+ Q GFC  Y++F+A  +  +      S  I+   S  +           +Y+    P  + L  I  L +L  LS  A+I  + A  +++ + V+ +M     L     +  +    G AV+AFEG+G++LPLE++ R  +RF + L   MA +++LY S   LGY  F +E K  IT N    +     V  L + G+ V   + F
Sbjct:  148 GRQVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSVDLRVYMLCFLPLIILLVFIRELKNLFVLSFLANI-SMAASLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLATLGYMCFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTYSIQF 364          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: S36A2_MOUSE (Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 61/195 (31.28%), Postives = 109/195 (55.90%), Query Frame = 2
Query:   92 GRVAVDAMIVLAQAGFCVSYLIFIANTLTHMIN--NSTT-----SQTILGFLSP---KALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAM-GLVMVEDVMIS----MKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTN 631
            GR  V   +++ Q GFC  Y++F+A+ L  ++   NSTT     ++T++  L+P     LY+    P  LGL  +  + +L  L+IF+ + ++  +  LV++   +I       Q P + ++  + +F    G A+++FE +G++LPLE++ ++ + F  IL   M+ I+ LY + GALGY  FG++ K  IT N
Sbjct:  141 GRRVVSFFLIVTQLGFCCVYIVFLADNLKQVVEAVNSTTISCHKNETVV--LTPTMDSRLYMLSFLPV-LGL--LVFVRNLRVLTIFSLLANISMLVSLVIIAQYIIQEIPDASQLPLVASWKTYPLF---FGTAIFSFESIGVVLPLENKMKDARGFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLN 327          
BLAST of FC929976 vs. ExPASy Swiss-Prot
Match: AVT4_YEAST (Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae GN=AVT4 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 55/224 (24.55%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   47 INSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMV---EDVMISMKQRPALKAFGDFSV--FSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNF-GAGLVSTLVNVGLCVNLFLTFP 700
            ++SFGD+G  + G   R+ +   +V+ Q GF  +Y+IF A  L   ++N       +G L    L ++    F + L+ I  ++ L+  S+ A+   +  + +V++   + +   +   PA+      +   ++  IG A++AFEG+G+I+P++   RN ++F  +L   +   ++L+ S   LGY A+G   + +I  N   + +   L+ +   + + L+ P
Sbjct:  357 VSSFGDIGLKLYGPWMRIIILFSLVITQVGFSGAYMIFTAKNLQAFLDNVFH----VGVLPLSYLMVFQTIIF-IPLSFIRNISKLSLPSLLANFFIMAGLVIVIIFTAKRLFFDLMGTPAMGVVYGLNADRWTLFIGTAIFAFEGIGLIIPVQDSMRNPEKFPLVLALVILTATILFISIATLGYLAYGSNVQTVILLNLPQSNIFVNLIQLFYSIAIMLSTP 575          
The following BLAST results are available for this feature:
BLAST of FC929976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
S36A4_HUMAN6.140e-1729.82Proton-coupled amino acid transporter 4 OS=Homo sa... [more]
S36A4_MOUSE1.047e-1629.36Proton-coupled amino acid transporter 4 OS=Mus mus... [more]
S36A2_MOUSE2.333e-1631.28Proton-coupled amino acid transporter 2 OS=Mus mus... [more]
AVT4_YEAST2.580e-1524.55Vacuolar amino acid transporter 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC34002D12EF PostHarvC1 Citrus clementina cDNA clone C34002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929976 ID=FC929976; Name=FC929976; organism=Citrus clementina; type=EST; length=707bp
GGTTCACACTCGTCGCAAGCTTGAAACCATTCATGGCTTCTCAAAAATCA
ATTCTTTTGGCGATCTTGGCTATACCGTTTGTGGTTCAGTTGGTCGTGTA
GCTGTCGATGCTATGATAGTCCTTGCGCAAGCTGGTTTCTGTGTTAGTTA
TCTAATCTTCATTGCCAATACTTTAACTCATATGATTAATAATAGCACTA
CTTCACAAACTATTCTTGGCTTTTTGTCACCTAAGGCTCTGTATATTTGG
GGGTGTTTCCCTTTCCAACTAGGGTTAAATTCAATTCCAACTTTGACTCA
TTTGGCCCCTTTGAGTATTTTTGCTGATATTGTTGATCTTGGAGCTATGG
GACTAGTGATGGTTGAAGATGTCATGATTTCCATGAAACAAAGGCCTGCT
TTAAAGGCTTTTGGTGACTTTTCTGTCTTCAGTTATGGGATTGGTGTCGC
TGTTTATGCCTTTGAAGGGGTTGGCATGATATTGCCGTTGGAATCTGAGA
CTAGAAACAAACAGAGATTTGGTCGAATATTGGGATGGTGTATGGCTTTC
ATTTCTCTATTGTATGGTTCATTTGGTGCATTGGGTTACTTTGCTTTTGG
TGAAGAAACCAAAGATATAATCACTACCAATTTTGGGGCTGGATTGGTGA
GCACTTTGGTGAATGTGGGTCTGTGTGTGAATCTGTTTTTGACTTTTCCA
TGATGAT
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