FC929981

Overview
NameFC929981
Unique NameFC929981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929981_ssr109 microsatellite FC929981_ssr109:109..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1870 contig Ccv1_Contig1870:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: ACDSB_DICDI (Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 52/176 (29.55%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  143 TSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADR-VDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            T+L  ++T L  KE+V  FA E + P    +D+++   +   L K + + NL GI                 IA+EE+++   ++ +     + L  N + R+GS  Q++KYL  +++   VG+  +SE  +GSD   +  +A R  DG +++NG K W TN   A   +V A  D
Sbjct:   33 TTLSEEETLL--KETVANFANEKVRPLVKVMDETSELNK--GLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELAKVDPAISVIVDVQNTLVNNCINRYGSIQQREKYL-SMLATNTVGSFCLSESGSGSDAFALATRAVRQSDGTFVLNGTKQWITNAKEAGVFIVMANVD 203          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: ACDP_MYCTU (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium tuberculosis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 50/165 (30.30%), Postives = 78/165 (47.27%), Query Frame = 2
Query:  173 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            + + ++   A + IAP AA++D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTD 182          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: ACDP_MYCLE (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium leprae GN=fadE25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 52/165 (31.52%), Postives = 76/165 (46.06%), Query Frame = 2
Query:  173 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            + + ++   A + IAP AA +DQ   FP++         FN   I  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD
Sbjct:   21 ELRATIRALAEKEIAPHAADVDQRARFPEEALAALNASGFN--AIHVPEEYGGQGADSVAACIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPSLAAEGAMASYALSEREAGSDAASMRTRAKADGDDWILNGFKCWITNGGKSTWYTVMAVTD 182          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 50/165 (30.30%), Postives = 78/165 (47.27%), Query Frame = 2
Query:  173 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            + + ++   A + IAP AA++D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTD 182          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: ACOX4_ARATH (Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  353 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK 661
            + IA  EI+R   S       HS+L +  +   GS AQK+KYLP L     V   A++EP+ GSD  G+   A +V+GG+ ING K W  N   A  L+++A+
Sbjct:  118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR 220          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: ACAD8_DICDI (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=acad8 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  161 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 664
            + Q QF+     FA+E + P A K D+   FP+DV   +        GI   ++            I +E ++ A  S       H N+C   +  +G+  Q+ K+LP L+S E + +  ++EP +GSD   +  KA +    YI+NG+K + + G  ++  +V  +T
Sbjct:   41 EDQKQFQSMALDFAQEKMKPFAEKWDKEEYFPRDV--MREAAELGFGGIYVREDVGGSGLSRLDASIIIEALASADVSTTAFISIH-NMCAGLIDIYGTEEQRKKFLPSLVSMEKIASYCLTEPGSGSDAGSLSTKATKDGDHYILNGSKAFISGGGDSEVYLVMVRT 205          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: GCDH_HUMAN (Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 44/169 (26.04%), Postives = 82/169 (48.52%), Query Frame = 2
Query:  167 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            ++  +++   + +E + PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 229          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: GCDH_MACFA (Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 44/169 (26.04%), Postives = 81/169 (47.93%), Query Frame = 2
Query:  167 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            ++  +++   + +E + PR    +++  F +++     MG   + G T                +A  E+ R       +    S L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN+GSD   M+ +A  +  +  Y +NG K W TN P+A   VV+A+ +
Sbjct:   64 EILIRDTFRTYCQERLMPRILLANRNEVFHREII--SQMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMETRARYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE 229          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: GCDH_MOUSE (Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  371 EISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            E+ R            S+L ++ +  +GS  Q+ KYLP+L  GE +G   ++EPN GSD  GM+ +A  +  +  Y ++G K W TN PVA   +V+A+ +
Sbjct:  129 ELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWARCE 229          
BLAST of FC929981 vs. ExPASy Swiss-Prot
Match: GCDH_PIG (Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2
Query:  167 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD-KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 667
            ++  +++   + +E++ PR    +++  F +++     MG   + G T                +A  E+ R       +    S+L ++ +  +GS  Q+  KYLP+L  GE +G   ++EPN GSD   M+ +A  +  +  Y +NG K W TN PVA   VV+A+ +
Sbjct:   33 EILIRDTFRTYCQEHLMPRIVLANRNEVFHREII--SEMGELGVLGPTIKGYGCAGVSSVAYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRALHNPSNRSYTLNGAKTWITNSPVADLFVVWARCE 199          
The following BLAST results are available for this feature:
BLAST of FC929981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACDSB_DICDI1.535e-1429.55Probable short/branched chain specific acyl-CoA de... [more]
ACDP_MYCTU4.466e-1430.30Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCLE4.466e-1431.52Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACDP_MYCBO4.466e-1430.30Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACOX4_ARATH2.895e-1338.83Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidop... [more]
ACAD8_DICDI3.781e-1327.38Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dic... [more]
GCDH_HUMAN6.449e-1326.04Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo ... [more]
GCDH_MACFA8.423e-1326.04Glutaryl-CoA dehydrogenase, mitochondrial OS=Macac... [more]
GCDH_MOUSE4.180e-1234.65Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus m... [more]
GCDH_PIG2.709e-1126.47Glutaryl-CoA dehydrogenase, mitochondrial (Fragmen... [more]

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Properties
Property NameValue
Genbank descriptionC34002E05EF PostHarvC1 Citrus clementina cDNA clone C34002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929981 ID=FC929981; Name=FC929981; organism=Citrus clementina; type=EST; length=676bp
GAGTCCGTAAAACACAAAGAGACGAGAGAAAGTAAAAAAGGGAAAAAGGT
AAGAGAGAAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCG
TTCTTTACGAAGAAGAAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCT
GCTCTTTGATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTG
CGCGAGAAAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCG
TTCCCACAGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCA
TGGAATAACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGT
ATCATTGCATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGT
CTCTCTTACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACA
TGGAAGCCCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAG
AACATGTAGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTT
GTTGGCATGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAA
TGGGAACAAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTG
TTTACGCAAAAACAGACATTAAAGCT
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