FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929982_ssr33 microsatellite FC929982_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LISIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria innocua GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 67/172 (38.95%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGV S ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET+EK +++L
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLEKAISDL 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 68/177 (38.42%), Postives = 101/177 (57.06%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 676
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGV S ++ L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++  GV
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLITNPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHINHLCGLIEWAASKGLKSVSLHLFTDGRDTSAKSANKYINTIE---AKIKSTGV 188          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 66/172 (38.37%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA+++LDG+G+      N +  A+ P  D +  + P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGV S ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDL 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 66/172 (38.37%), Postives = 99/172 (57.56%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGV S ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDL 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 68/170 (40.00%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFET-GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLA 655
            V + +LDGWG  +P   N  ++A TPT+D+  +S P   RLV  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  Y ++    +I    ET G  HL+GL+SDGGV   +  +   +K   + G   + LH +TDGRDV   S++ +++ +E  +A
Sbjct:    7 VVLCILDGWGSAEPGPANAPYLAKTPTLDAIMQSCPTA-RLV-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYDNDALQAFIAKLKETGGAAHLMGLVSDGGVHGHVTHILAAIKAIRDAGVP-VWLHAITDGRDVAPKSALTYLDQLEAGMA 172          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.528e-26
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA+++LDG+G+      N +  A+ P  D +    P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +D A+  G+  +++  N  +         LHL GLLSDGGV S ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K + +L
Sbjct:    6 VAIIILDGFGKRAETVGNAVAQANKPNFDRYWADFPHGE--LKAAGLDVGLP-EGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFTHTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAMNDL 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 61/170 (35.88%), Postives = 100/170 (58.82%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA++++DG+G  K  K N I  + TP +D  KK  P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  + ++       + +  +LH++GLLSDGGV S +D L+ ++K A ++G +++ +H  TDGRD    S++ + + ++  + E+
Sbjct:    6 VALIIMDGFGYNKDVKGNAIAESKTPNLDRIKKEYPNT--LINASGLDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKSIKDGDFFTNKVLCEAMDNAKENSLHVMGLLSDGGVHSHIDHLKAIIKMAKDKGVQKVYVHAFTDGRDTDPQSALEYAKEVQASMDEI 172          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PROM3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 65/166 (39.16%), Postives = 96/166 (57.83%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIE 643
            V + +LDGWG  +  ++N I  A+TP MD+   + P    L+ A G+AVGLP ++ MGNSEVGH  +GAGR+  Q    +   + +G++ Q      +        GTLHL+GL SDGGV S ++ L  LL  A+  G  ++ LH++TDGRD    S+  ++  IE
Sbjct:   18 VVLAILDGWGHREELEHNSIRSAETPIMDALWHAYPHT--LIEASGAAVGLP-DNQMGNSEVGHLTIGAGRVIRQELVRISETVQTGRLGQTPALIALAERLRKSDGTLHLLGLCSDGGVHSHINHLCGLLHWAAAAGLNKVALHLITDGRDTPTQSASNYLHQIE 180          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 71/190 (37.37%), Postives = 106/190 (55.79%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 691
            ++R   V ++++DGWG   P   N   +ADTP +D +  + P  +  + A G  VGLP E  +GNSEVGH  +GAG I  Q    +  A+A G  + +  F     ++K       LHL+GL   GGV +  D L  LL+ A  +  +R+ LH+  DGRDVL  S++GF++T+E  +A L G GV A ++
Sbjct:    1 MTRPRPVVLIIMDGWGVAPPGPGNAADLADTPHVDEWMATCP--FTTLGASGLDVGLP-EGQIGNSEVGHLNIGAGFIVYQELTRISKAIADGDFFTNPAFLQAIEHVKQ--HNSALHLMGLFGPGGVHAHEDHLHALLELAHRQQVRRVYLHLFLDGRDVLPRSALGFLDTLEGVIARL-GVGVIATVS 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PROMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 72/176 (40.91%), Postives = 103/176 (58.52%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 673
            V + +LDGWG  + +  N I+ ADTP MD+  ++ P    L+ A G+ VGLP ++ MGNSEVGH  +GAGRI  Q    +   + S K+ Q     N      ET  TLHL+GL SDGGV S ++ L  LL+ A  +G +++ +H  TDGRD    SS+ +++ I K+  E+ G G
Sbjct:   18 VVLTILDGWGHREENINNAINNADTPVMDALWQAYPHT--LIEASGADVGLP-DNQMGNSEVGHLTIGAGRIIQQELVRISNTIRSKKLDQITNLSNLANKLIETDKTLHLVGLCSDGGVHSHINHLCGLLEWAKNKGIQKVAVHAFTDGRDTPAKSSLQYLKII-KEKFEVLGIG 189          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_LISIN1.470e-2638.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM12.507e-2638.422,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF3.275e-2638.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMO4.277e-2638.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST7.295e-2640.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW69.528e-2638.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD61.625e-2535.882,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM32.772e-2539.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAD2.772e-2537.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMA3.621e-2540.912,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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