FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ECO57 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O157:H7 GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 67/181 (37.02%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGV S  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG  A I
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKGRVASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ECO24 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 67/181 (37.02%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGV S  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG  A I
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKGRVASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ACAM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acaryochloris marina (strain MBIC 11017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 63/172 (36.63%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            V +V+LDGWG  +    N I  A+TP +DS   + P  +  ++  G AVGLP    MGNSEVGH  LGAGR   Q    +  A+  G +  +   + +  + S  +  LHLIGL S GGV +  D L  LLK A E    ++ +H + DGRD    S+   +  ++K +A +
Sbjct:    9 VVLVILDGWGYQENSDGNAIATANTPIIDSLWTAYPSTF--IQTSGKAVGLPA-GQMGNSEVGHLNLGAGRTVPQELVRIADAIEDGSLATNPALDKVCKQVSQASTKLHLIGLCSKGGVHAHSDHLLALLKLAKEHNISQVCIHAILDGRDTPPKSAKDEILRLQKQIAHI 177          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_STAHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 63/181 (34.81%), Postives = 93/181 (51.38%), Query Frame = 2
Query:  155 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 691
            A+++LDG+   + +  N +  A  P  D +    P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    ++ ++A G  ++++  N            LH+ GLLSDGGV S    L  LL+ A ++G  ++ +H   DGRDV   S++ ++E  E     L G G  A I+
Sbjct:    7 ALIILDGFANRESEHGNAVKQAHKPNFDRYYSKYPTTQ--IEASGLDVGLP-EGQMGNSEVGHMNIGAGRIVYQSLTRINKSIADGDFFENDVLNNAVQHVNEHDSALHVFGLLSDGGVHSHYQHLFALLELAKQKGLDKVYVHAFLDGRDVDQKSALKYIEETEAKFKSL-GVGEFASIS 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_FRAP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 65/173 (37.57%), Postives = 92/173 (53.18%), Query Frame = 2
Query:  158 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLAL-----ASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            +V+LDGWG  + D +N I  A+TPT DS  +  P    L+ A    VGLP    MGNSEVGH  +G GR+  Q    +D A+      + K   D   N I+   +   LHL+GLLS GGV S  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +  L +L
Sbjct:    7 LVILDGWGYSESDYFNAIKNANTPTWDSIWQDFPRT--LISASSLEVGLP-RGQMGNSEVGHVNIGCGRVVYQELTKIDKAIEEKTFGNNKAICDAIDNVIQ---KDSNLHLMGLLSPGGVHSHEEHIFEMIKIAKQKGVKRVYLHAFLDGRDTPPRSAESSIKKTDDLLQKL 173          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ENTS8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 68/181 (37.57%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            V +V+LDG+G  +  + N I  A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     +++      +  +   G  +H++GL S GGV S  D +  +++ A+ RGA++I LH   DGRD    S+   +E      AE+ GKG  A I
Sbjct:    8 VVLVILDGYGYREDSQDNAISAAKTPVMDSLWVNRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKERTFFENPVLTAAVDKAVAAGKAVHIMGLASPGGVHSHEDHILAMIELAAARGAEKIYLHAFLDGRDTPPRSAKASLEKFAAKFAEV-GKGRIASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_WOLSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolinella succinogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 67/171 (39.18%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  158 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE---TIEKDLAEL 661
            +++ DG G      +N    A  PT DS   SAP    L+  HG +VGLP E  MGNSEVGH  +GAGRI  Q    + LAL  G +  ++    +  S     +HL GL SDGGV S ++ L  L +  S  G   + LH++TDGRDV   SS  F+     +E DL ++
Sbjct:    7 LIITDGIGHKPSSPHNAFTQAKKPTYDSLFASAPHA--LLSTHGLSVGLP-EGQMGNSEVGHMCIGAGRILYQDLVKISLALKDGSL--EKNPTLLGFSSRAKRIHLAGLASDGGVHSHMEHLLGLAQIFSRLG-HEVLLHLITDGRDVSPTSSKEFIAQALALESDLIKI 171          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_RHOPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopseudomonas palustris GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 65/169 (38.46%), Postives = 90/169 (53.25%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDL 652
            V +V+LDGWG  +    N +  A TPT D+   + P  +  +R  G +VGLP    MGNSEVGH  +GAGR+  Q    +  A+A+G+I +  G      K     GT HL+GL+S GGV S  D    L K  ++ G K + LH  TDGRD    S+V  +  +  +L
Sbjct:    7 VMLVILDGWGWREDPADNAVLQAKTPTFDALWTNGPHAF--LRTSGKSVGLPN-GQMGNSEVGHLNIGAGRVVMQDLPRISDAIANGEIERAPGLVAFIDKLKASGGTCHLMGLVSPGGVHSLQDHACALAKILAKAGVKTV-LHAFTDGRDTPPKSAVDDIVRLRAEL 171          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_METFK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = 2
Query:  158 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRG 667
            +V+LDG+G  +    N I +A+TP +D F    P    L+ A  + VGLP    MGNSEVGH  +GAGR+  Q  + ++ A+AS + + +    E  N  K   +   +H++GLLSDGGV S  D +   ++ A   G +++ +H   DGRD    S+  ++E +E+  A + G
Sbjct:    8 LVILDGFGYREDSHDNAIALANTPNIDRFWTQYPHT--LINASETFVGLP-RGQMGNSEVGHLNIGAGRVVFQDFERINQAIASREFFSNPVLIEAVNKAKAGHKA--VHILGLLSDGGVHSHQDHIHATIEMAVNAGVEKVYVHAFLDGRDTPPISAKPYLEKLEQACASIGG 176          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 59/163 (36.20%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  158 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIE 643
            +++ DG G  K   +N    A  PT D   K+ P  + L+  HG +VGLP +  MGNSEVGH  +GAGR+  Q    + L+L + ++  +  F N I+ S     +HL+GL+SDGGV S ++   + L    E+  K++ LH++TDGRDV   S++ +++ ++
Sbjct:    7 LIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLP--YSLIDTHGLSVGLP-KGQMGNSEVGHMCIGAGRVLYQDLVRISLSLQNDELKNNPAFLNTIQKSH---VVHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQ 162          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_ECO571.205e-2037.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO241.205e-2037.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACAM11.205e-2036.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAHJ1.574e-2034.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAP21.574e-2037.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ENTS81.574e-2037.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLSU2.056e-2039.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOPA2.056e-2038.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METFK2.056e-2035.062,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ2.056e-2036.202,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
back to top