FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 232) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  131 QLSRNNI---VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDV 604
            Q +R N+   + ++++DG G     + N   +A TP  D   +  P    L+ A G  VGLP E  MGNSEVGH  +GAG +   G  +++ AL +GK +++E F    + S +TG  L ++GL S GGV S  D L  L+  A+  G K++ LH+  DGRDV
Sbjct:    2 QKNRKNVKKKLVLIIIDGLGLRFESQGNGFALAKTPVFDRLFQEYPNS--LIAASGQEVGLP-EGQMGNSEVGHLNIGAGFVVYTGISIINNALKTGKFFENEKFILAFRHSIKTGFPLQIMGLFSPGGVHSHQDHLFALIDFAANFGVKKLNLHLFGDGRDV 161          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_HALWD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Haloquadratum walsbyi (strain DSM 16790) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 61/166 (36.75%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  155 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 646
            A+V+LDGWG    D+ N +  A TPT D   +        +   G  VGLP    MGNSEVGH  +GAG++  Q    V+ A+ +G    +   N  +       G +H +GLLSDGGV S  + L  L++ A +R    I  H+ TDGRD    SS  ++ T+E+
Sbjct:    4 ALVILDGWGLGDHDRRNAVQTASTPTFDRLIEKGAN--GTLDVSGRQVGLPA-GQMGNSEVGHLNIGAGQVVKQAYTRVEDAIDNGSFQTNAAINAAFNHAVATNGRVHFMGLLSDGGVHSEQEHLHALIELAGDRNIDAI-THVFTDGRDTNPHSSEQYLTTLEE 165          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ANTSP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Antithamnion sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.812e-20
Identity = 65/170 (38.24%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-------YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 640
            + +++LDGWG     K N IH A+TP +D    + P+   L+ A G  VGLP    MGNSEVGH  +GAGRI  Q     DL   S  I   E FN       Y     +   +H++GL S+GGV S ++ L+ L++  S++      LH++TDGRD L   +  FV+ I
Sbjct:    9 IILMILDGWGHSTNAKGNAIHEANTPIIDKLWDNYPK--TLLSASGEHVGLP-HKQMGNSEVGHTTIGAGRIINQ-----DLVKISKSIKNKEFFNNYQLHNIYKYSCEKNSKVHIVGLCSNGGVHSHINHLKALIQ-ISKQYKVMTCLHLITDGRDTLPKQAKLFVKEI 169          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 62/176 (35.23%), Postives = 93/176 (52.84%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 673
            + +++LDG+G     + N ++ A  P +D    + P    L+   G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G+ +++      +  +   G  +H +GLLSDGGV S  D L  + + A +RGA++I LH   DGRD    S+   +E ++     L GKG
Sbjct:    8 LVLMILDGFGHSDSPESNAVYAAKKPVLDRLWATVPNG--LISGSGMDVGLP-DGQMGNSEVGHMNLGAGRVVYQDFTRVTKAIRDGEFFENPTICAAVDKAVAAGKAVHFMGLLSDGGVHSHQDHLIAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDATFQAL-GKG 179          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_NOSP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIE 643
            V +V+LDGWG  +  + N I  A TP +DS   + P    L+R  G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I  +     I     +    LHL+GL S+GGV S +  L  LL  A  +    + +H +TDGRD      V  +  ++
Sbjct:    9 VVLVILDGWGYCEEKRGNAIVAAKTPIVDSLWAAYPHT--LIRTSGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAVEDGSIALNPALVKICQEVRSRNSKLHLVGLCSEGGVHSHITHLFGLLDLAKNQQIPEVCIHAITDGRDTAPTDGVRAITMLQ 171          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 691
            V +++LDG+G     + N +  A+ P  D      P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +   +  G  + ++     +  + E  T LHL+GLLS+GGV S +D L+ LL+ A ++G +++ +H   DGRDV   S   F+  +E  + E+ G G  A I+
Sbjct:    6 VMLMILDGFGISPNKEGNAVAAANKPNYDRLFNKYPHTE--LQASGLEVGLP-EGQMGNSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKDFIVELENAMKEI-GVGEIATIS 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_YERPS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pseudotuberculosis GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 67/181 (37.02%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            + + +LDG+G  +  + N I  A TP MD   +  P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + +TG  +H++GLLS GGV S  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G  A I
Sbjct:    8 LVLTILDGYGHREEQQDNAILNAKTPVMDVLWQQQPHT--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKEGDFFTNPTLTAAVDNAVKTGKAVHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNGRIASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_YERPP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis (strain Pestoides F) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 67/181 (37.02%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            + + +LDG+G  +  + N I  A TP MD   +  P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + +TG  +H++GLLS GGV S  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G  A I
Sbjct:    8 LVLTILDGYGHREEQQDNAILNAKTPVMDVLWQQQPHT--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKEGDFFTNPTLTAAVDNAVKTGKAVHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNGRIASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_YERPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 67/181 (37.02%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            + + +LDG+G  +  + N I  A TP MD   +  P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + +TG  +H++GLLS GGV S  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G  A I
Sbjct:    8 LVLTILDGYGHREEQQDNAILNAKTPVMDVLWQQQPHT--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKEGDFFTNPTLTAAVDNAVKTGKAVHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNGRIASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_YERPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 67/181 (37.02%), Postives = 95/181 (52.49%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            + + +LDG+G  +  + N I  A TP MD   +  P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D  +  G  + +      +  + +TG  +H++GLLS GGV S  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G  A I
Sbjct:    8 LVLTILDGYGHREEQQDNAILNAKTPVMDVLWQQQPHT--LIAASGLDVGLP-DGQMGNSEVGHVNLGAGRIVYQDLTRLDKEIKEGDFFTNPTLTAAVDNAVKTGKAVHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNGRIASI 184          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_MYCH27.812e-2038.042,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALWD7.812e-2036.752,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANTSP7.812e-2038.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPF1.020e-1935.232,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NOSP71.020e-1937.352,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPE1.020e-1935.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPS1.333e-1937.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPP1.333e-1937.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPN1.333e-1937.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPE1.333e-1937.022,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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