FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 691
            V +++LDG+G     + N +  A+ P  D      P     ++A G  VGLP E  MGNSEVGH  +GAGRI  Q    +   +  G  + ++     +  + E  T LHL+GLLS+GGV S +D L+ LL+ A ++G +++ +H   DGRDV   S   F+  +E  + E+ G G  A I+
Sbjct:    6 VMLMILDGFGISPNKEGNAVAAANKPNYDRLFAKYPHTE--LQASGLEVGLP-EGQMGNSEVGHLNIGAGRIIYQELTRITKEIKEGTFFTNKALVKAMDEAKENNTSLHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKEFIVELENAMKEI-GVGEIATIS 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ARCB4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arcobacter butzleri (strain RM4018) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 58/167 (34.73%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  143 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 640
            +N   +++ DG G    +K N  + A  PT D   ++ P  + L+  +G  VGLP +  MGNSEVGH  +G+GR+  Q    + LA+ +  +  +E   N I  S     +HL+GL SDGGV S ++ +  + K A   G K++ +HI+TDGRDV    +  ++  I
Sbjct:    2 SNKTLLIITDGIGHNSSNKNNAFYTAKKPTYDYLFENVP--YSLIHTYGEYVGLP-DMQMGNSEVGHMTIGSGRVLYQDLVKIHLAIKNDTLKDNEVLKNTISKS---NNIHLLGLASDGGVHSHINHIIAMAKIAKNMG-KKVFIHIITDGRDVAPNCAKTYINQI 161          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_AERS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aeromonas salmonicida (strain A449) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.740e-19
Identity = 60/176 (34.09%), Postives = 92/176 (52.27%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 673
            + +V++DGWG     ++N +  A TP +D   +       L+   G  VGLP +  MGNSEVGH  +GAGRI  Q    +   +  G  +Q+        S  T    +H++GL+S GGV S  + +  +++ A++RGA++I  H   DGRDV   S+   +E  +   A L GKG
Sbjct:    8 LVLVIMDGWGYSTKQEHNAVAAAKTPNLDRLARDYTST--LISGSGLDVGLP-DGQMGNSEVGHVNIGAGRIVYQELTRISKEIKDGDFFQNVELAKALDSAVTKGKAVHIMGLMSPGGVHSHEEHIMGMIEMAAKRGAEQIYFHAFLDGRDVPPRSAQSSIEQFDALFARL-GKG 179          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 64/181 (35.36%), Postives = 98/181 (54.14%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            +A+++LDGWG  +    N I+ A+TP +D  + +A     L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+A  +  Q+    + +  + + G  +H++GLLS GGV S  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G  A I
Sbjct:    8 IALLILDGWGYRENTHMNAIYHANTPVLD--RLNAQYAHGLISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIADHEFEQNPALCDAVDVAVKAGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHGRIASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 63/181 (34.81%), Postives = 98/181 (54.14%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            +A+++LDGWG  +    N ++ A+TP +D  + +A     L+   G  VGLP +  MGNSEVGH  LG+GRI  Q    +  A+A  +  Q+    + +  + +TG  +H++GLLS GGV S  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G  A I
Sbjct:    8 IALLILDGWGYRENTHMNAVYHANTPVLD--RLNAQYAHGLISGSGLDVGLP-DGQMGNSEVGHINLGSGRIVYQELTRISKAIADHEFEQNPALCDAVDAAVKTGGAVHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKSSLSHFD-DLFTTLGHGRIASI 184          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET----GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRD 601
            ++R   +A+++LDGWG  +  + N +  A+TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GRI  Q    +  A+  G+   D     IK   +       +H++GLLS GGV S  D ++ + + + +RGAK++ LH   DGRD
Sbjct:    2 MTRKRPLALLILDGWGYRENTQKNAVFHANTPVLDQLTAKYPNS--LISGSGIDVGLP-DGQMGNSEVGHINIGSGRIVYQELTRISKAIDDGEF--DTNPTLIKAIDDAIKADAAVHIMGLLSPGGVHSHQDHIEAMCRLSVKRGAKKVYLHAFLDGRD 156          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_THIDA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 63/171 (36.84%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            V +++LDG+G       N I  A+ P  D   K  P    L+ A  S VGLP +  MGNSEVGH  +GAGR+  Q    +D A+ SG  Y +    N +  + + G TLH++GLLSDGGV S       LL  A+  G  ++ LH+  DGRD    S+  ++  +   +A+
Sbjct:    6 VLLIILDGFGCRDERANNAIAQANKPNWDRLWKHHPHT--LIHASESEVGLP-KGQMGNSEVGHLNIGAGRVVYQEFTRIDRAIESGYFYTNPALLNAVHLARDNGKTLHVLGLLSDGGVHSHELHFHALLDLAAREGLSKVCLHVFLDGRDTPPKSAELYLRRLTDKIAQ 173          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            V +V+LDG+G  + +  N + +A+TPT D+   ++P  +  ++  G  VGLP +  MGNSEVGH  +GAGR+  Q    +  +   G + Q+        + +   GT HL+GL+S GGV +  D +  L K  S  G   + +HI +DGRD    S   F+    K+L +
Sbjct:   10 VMLVILDGFGWREDESDNAVRLANTPTFDTLWATSPHAF--LKTSGEDVGLP-DGQMGNSEVGHLNIGAGRVVMQELPRISRSARDGSLAQNPALLEFIAALKASGGTCHLMGLISPGGVHAHQDHVVALTKIVSAAGVP-VAVHIFSDGRDTAPRSGEDFIGKFLKELPD 176          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_AYWBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 58/168 (34.52%), Postives = 88/168 (52.38%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERG-AKRIRLHILTDGRDVLDGSSVGFVETI 640
            V +++LDG G     + N  H+A TP +D   K+ P     ++A G  VGLP +  MGNSEVGH  LGAGR+  Q    ++ A+     + ++ F     ++K +     +HL+GL+SDGG+ S LD  + L     E   A    LH  TDGRD    S + +++ +
Sbjct:    6 VGLIILDGLGLTDQKENNAFHLAKTPYLDYLLKNFPNT--TLKASGEEVGLP-QGQMGNSEVGHLNLGAGRVVYQSLTQINKAIRDKTFFTNKQFLQAIEHVKKN--NSKIHLLGLISDGGIHSHLDHFKALFDLLKENNLANNTFLHAFTDGRDTGTHSGINYIKNL 168          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.064e-19
Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-----NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVG 625
            +A+++LDGWG  +    N I  A TP +D      P    L+   G  VGLP +  MGNSEVGH  +G+GR+  Q    V  A+  G+  ++        + IK +   G +H++GLLS GGV S  + ++ + + A +RGAK++ LH   DGRD    S+ G
Sbjct:    8 LALLILDGWGYRENPHNNAIFHARTPVLDKLNAQFPNS--LISGSGLDVGLP-DGQMGNSEVGHINIGSGRVVYQELTRVSKAIEEGEFEENTVLCKTIDDAIKAN---GAVHIMGLLSPGGVHSHEEHIEAMCRMAVKRGAKQVYLHAFLDGRDTPPRSAKG 164          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_CLOP11.740e-1935.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ARCB41.740e-1934.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AERS41.740e-1934.092,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM2.273e-1935.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON2.969e-1934.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH2.969e-1935.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THIDA3.877e-1936.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX3.877e-1933.922,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AYWBP3.877e-1934.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO5.064e-1936.202,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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