FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929982_ssr33 microsatellite FC929982_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_EHRCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ehrlichia chaffeensis (strain Arkansas) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 58/183 (31.69%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  143 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-----KPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 676
            N+ V + +LDGWG  +  ++N I  +  P  D+     P+   +   HG  VGLP +  +GNSEVGH  LG+GRI  Q     DL   + +I   +   Y+     K     G  H+ GLLSDGGV S L    L +         +I +HI  DGRD    S++ ++  + + +  L    +
Sbjct:    3 NHSVILCILDGWGNSENSQFNAIAQSYKPCWDNTILQYPKSQLIT--HGLNVGLP-DGQIGNSEVGHVNLGSGRIVLQ-----DLCKINNEIKYIKNNRYLLEFIKKIKQNNGICHIAGLLSDGGVHS-LHTHMLDIIDTLSNFQIQIAVHIFLDGRDTPPISAIKYINILREHIKHLNNVNI 176          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_UREPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  143 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 640
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G V S  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFPT--LQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_UREP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  143 NNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 640
            N  + ++++DG G  K D  N +H+A+ PT++    + P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +  +   +  + +  + +   +H++G+ S+G V S  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    4 NKKIGLIIIDGLGIGKEDNTNAVHLANPPTLNYLINNFPT--LQISAAQQNIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINNYMKSVDYESAVLSNIKNEIVHIVGMYSNGLVHSNYEHIHWIIKQIIKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 47/169 (27.81%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 640
            +S N  +A++++DG G  K D  N +++A+  T++   K+ P     + A    +GL  E+  GNSE+GH  +GAGRI      L D A  +    + +  + +        +H++G+ S+G V S  + +  ++K   +    ++ LH+++DGRD        F+E I
Sbjct:    1 MSLNKKLALIIIDGLGIGKKDDTNAVYLANPKTLNYLIKNYPTLE--ISAAQQPIGL-LENQAGNSEIGHLTIGAGRII-----LNDNANINSYTKRLDYESLVLNDINNEIVHVVGMYSNGLVHSNYEHIHWIIKELVKNN-NQVVLHLISDGRDDYPYGFAQFIEQI 160          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_EHRCR4.905e-1431.692,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREPA5.996e-1227.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREP25.996e-1227.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU16.629e-1127.812,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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