FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929982_ssr33 microsatellite FC929982_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_VESOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 66/180 (36.67%), Postives = 98/180 (54.44%), Query Frame = 2
Query:  137 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGT-----LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            S+     +++LDGWG  K  K N I +A+T   D   ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +   L +G  +++     ++ S E        +H++GLLSDGGV S  +Q+  +L+  S +G K + LHI TDGRD    S+  +++ +E  + EL
Sbjct:    3 SKKQTKLLLILDGWGYSKTTKNNAIALANTSVWDRLNQTFPHS--LIHTSGKDVGLPGKQ-MGNSEVGHLNLGAGRIVKQDFTRIYNELQNGDFFRNP---ILRNSLEYANDNNKAIHIMGLLSDGGVHSHEEQIHAMLEMTSRQGCKNVYLHIFTDGRDCAQKSAKKYIKKLESKMKEL 176          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 63/177 (35.59%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGV S    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA+
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELAK 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 63/177 (35.59%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGV S    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA+
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELAK 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 63/177 (35.59%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            +S N  + +++LDGWG  + D+YN I  A+TP  D + ++ P    L++A G  VGLP E  MGNSEVGH  +GAGR+  Q    ++ A+ +GK  ++  F+ +    +    +LH++GLLS GGV S    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA+
Sbjct:    1 MSHNAPLVLMILDGWGYNENDRYNAIAKANTPQWDEWWQTCPHI--LLKASGLPVGLPDEQ-MGNSEVGHMHIGAGRVIQQDFTRINEAINNGKFAKNAVFHEVIDQLKKTEKSLHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELAK 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 70/172 (40.70%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            V +V+LDGWG  +   YN I VA+TP MDS  ++ P+   L+R  G  VGLP E  MGNSEVGH  +GAGRI  Q    +  A+  G I+Q      +    +   G LHLIGL S GGV S L  L  LL  A       + +H +TDGRD      V  +E I+  + ++
Sbjct:    9 VVLVILDGWGYRQTTDYNAIAVANTPVMDSLWEAYPKT--LIRTSGKDVGLP-EGQMGNSEVGHLNIGAGRIVPQELVRITDAIEDGSIFQSPVLINLCDEVKGRGGKLHLIGLSSAGGVHSHLCHLLGLLDLAKLHSVSDVCVHAITDGRDTNPTEGVNVIEAIQAHIDKI 177          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 68/182 (37.36%), Postives = 101/182 (55.49%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 691
            V +++LDG+G       N +  A+ P +D+  K  P     + A G  VGLP E  MGNSEVGH  +GAGRI  Q    +  +++ G  +++   N    + +    TLHL+GLLS GGV S +D L+ L+K A E+  K++ +H   DGRDV   S+  ++E IE  + E+ G G  A I+
Sbjct:    6 VVLMILDGFGLTNKVDGNAVSAANKPNLDNILKKYPHTQ--LGASGMDVGLP-EGQMGNSEVGHLNIGAGRIVYQALTKITKSISDGDFFENVALNKAIENVKKNNSTLHLLGLLSPGGVHSHIDHLKGLIKLAKEKDIKKVYIHAFLDGRDVAPSSAKEYIEDIENYMNEI-GVGEIATIS 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_TRIEI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Trichodesmium erythraeum (strain IMS101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 68/167 (40.72%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIE 643
            V +++LDGWG Y+ +KY N I V  TP +DS  ++ P    L++A G AVGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++    I          LHL+GL S GGV S ++ L  LL  A  +G   + +H +TDGRD    S +  ++ IE
Sbjct:    9 VVLIILDGWG-YREEKYGNAIAVGKTPNIDSLWQAYPRT--LIQASGKAVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGLIVQNQAIKKICQDVIERNSKLHLVGLCSSGGVHSHVNHLLGLLDVAKAKGISDVCVHAITDGRDTNPKSGLHVLKQIE 171          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SYNP6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 68/170 (40.00%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLA 655
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGV + LD L  LLK A+ +G + + +H +TDGRD      V  +  IE+ +A
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKIERLIA 175          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SYNE7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus elongatus (strain PCC 7942) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 68/170 (40.00%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLA 655
            V +V+LDGWG     + N I  A+TP MD+  ++ P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+  G I ++        +       LHLIGL SDGGV + LD L  LLK A+ +G + + +H +TDGRD      V  +  IE+ +A
Sbjct:    9 VVLVILDGWGYRNATEGNAIRTAETPIMDALWEAYPST--LIHTSGKDVGLP-DGQMGNSEVGHLNLGAGRIVPQELVRITDAVEDGSILENPALLQACSAVRQHGSKLHLIGLCSDGGVHAHLDHLGGLLKLAAAQGIQDVYIHAITDGRDTNPTEGVNCITKIERLIA 175          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 68/172 (39.53%), Postives = 93/172 (54.07%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA++++DGWG  +    N I  A TP +D   K       L+ A G  VGLP    MGNSEVGH  LGAGR+  Q    V  A+  G  +++E    N  K   +   +H++GLLS GGV S  D +  ++K A++RGAK+I LH   DGRD    S+   +E  +K   EL
Sbjct:    8 VALIIMDGWGHREDTTNNAIAHAKTPVLDRLTKETTNT--LISASGMDVGLPG-GQMGNSEVGHVNLGAGRVVYQDFTRVTKAIEDGDFFENEVLVSNVDKAIKQDKAVHIMGLLSPGGVHSHQDHIFAMIKLAAKRGAKKIFLHAFLDGRDTPPRSAKAPLEAADKVFEEL 176          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_VESOH1.521e-2336.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL1.987e-2335.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH1.987e-2335.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA1.987e-2335.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP71.987e-2340.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB11.987e-2337.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TRIEI2.595e-2340.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNP62.595e-2340.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNE72.595e-2340.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA62.595e-2339.532,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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