FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929982_ssr33 microsatellite FC929982_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 64/176 (36.36%), Postives = 95/176 (53.98%), Query Frame = 2
Query:  140 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            ++ +V +++LDG+G     + N I  A+ P +D F +  P    +VR  G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  ++ + F     +       LHL GLLSDGGV S    L  LL+ A  +  K + +H   DGRDV   S++G+VE +E  + E+
Sbjct:    2 KDKLVMLIILDGYGINPRKEGNAIEAANKPNIDRFMREYPNT--IVRTSGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQELTRITKSIQDGDFFEKKEFLDAAENCRKHNSKLHLFGLLSDGGVHSHNTHLYGLLEFAKRQNLKDVYVHCFFDGRDVPPDSAMGYVEELENKIREI 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium tetani GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 62/172 (36.05%), Postives = 95/172 (55.23%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            V +++LDG+G    +  N + +A+ P  D   +  P     ++A G  VGLP E  MGNSEVGH  +G+GR+  Q    +   +  G  +++   NY   +      +LHL+GLLSDGGV S +D L+ +LK A ++G  R+ +H   DGRDV   S+  ++  IE  + EL
Sbjct:    6 VMLMILDGFGITNHEDGNAVKMANKPNFDKLLREYPHTQ--LKASGLNVGLP-EGQMGNSEVGHLNIGSGRVIYQELTRITKDINDGVFFENTEINYAIDEAIKNNSSLHLLGLLSDGGVHSHIDHLKAILKLAKDKGLNRVYVHAFLDGRDVPPSSAKEYIINIENYMKEL 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 66/172 (38.37%), Postives = 99/172 (57.56%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE-TGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            V +++LDG+G     + N + +A  P +D   +  P     ++A G AVGLP E  MGNSEVGH  +G+GRI  Q    +  A+A G  +++E       + + TG+ LHL+GLLSDGGV S ++ L+ LL+ A +   + + +H   DGRDV   S   F+E  EK +AE+
Sbjct:    6 VMLMILDGFGIAPKSEGNAVTLAKKPNLDKLFEKYPTSQ--LQASGLAVGLP-EGQMGNSEVGHLNIGSGRIVYQELTRITKAIADGDFFENESLKLAMTNAKKTGSSLHLMGLLSDGGVHSHIEHLRGLLEFAKKEEVQNVYVHAFMDGRDVPPSSGQEFIEKTEKMMAEV 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 70/182 (38.46%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 691
            V +V+LDGWG       N +  A+TP +DS   + P    L++A G AVGLP    MGNSEVGH  LGAGR+  Q    +  A+ +G ++QD     +        G  H +GL S+GGV S +D L  LLK A++       +H +TDGRD L       +  +EK+L  L G GV A ++
Sbjct:    9 VVLVILDGWGYRDALDGNAVLAAETPVLDSLWAAYPHT--LLQASGRAVGLPA-GQMGNSEVGHLTLGAGRVVPQELVRISDAIETGSLFQDPLLMQVCRQLRERGGRFHFVGLCSEGGVHSHIDHLYGLLKLAAQAEIPAY-VHAITDGRDTLPRDGARVLAALEKELQWL-GNGVIATLS 185          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 66/190 (34.74%), Postives = 101/190 (53.16%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASG 697
            ++R   VA+ +LDGWG  +  + N   +ADTP MD    + P     +   G  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G   Q+        + +   GT HL+G++SDGGV   ++ +    K  ++     + +H LTDGRDV   S++G+ ET++  L +    GV+    +G
Sbjct:    1 MTRPKPVALCILDGWGLSERREGNAPLLADTPNMDRLMATCPHA--TLTTFGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEEGLFAQNSRLRAFIVTLQDSGGTAHLMGVVSDGGVHGHINHMIAAAKALADENIP-VVIHALTDGRDVAPRSALGYFETLQAALPD----GVEIATVTG 182          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_MICAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Microcystis aeruginosa (strain NIES-843) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 69/176 (39.20%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKY-NCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 664
            V +V+LDGWG Y+P +  N I +A TP MDS  +  P    L+R     VGLP E  MGNSEVGH  +GAGR+  Q    +  A+  G I Q++        I+P  +   LHLIGL S+GGV S LD L  LL  A  +G   + +H++TDGRD      +  ++ I++ + +++
Sbjct:    9 VVLVILDGWG-YRPQRSDNAIAMAKTPIMDSLWEVYPHT--LIRTSAKDVGLP-EGQMGNSEVGHLNIGAGRVVPQELVRISDAIEDGSIQQNQALLKLCAEIRP--KKSKLHLIGLCSEGGVHSHLDHLLGLLDLAKVQGISDVCIHVITDGRDTNVTDGMPAIKRIQEHINKIK 178          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 66/174 (37.93%), Postives = 101/174 (58.05%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            VA+++LDG+        N +  A+ P  D +    P     ++A G AVGLP E  MGNSEVGH  +GAGRI  Q    +++A+  G+  ++E F    N++K   + GT LHL GLLSDGGV S +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKE 173          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 63/177 (35.59%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  137 SRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            +R   +A+++LDGWG  +    N ++ A+TP +D   K  P    L+   G  VGLP +  MGNSEVGH  +G+GR+  Q    +  ++  G+   +  F     K     G +H++GLLS GGV S    +Q + K A  RGAK++ LH   DGRD    S+ G ++   +  AEL
Sbjct:    3 TRKRPLALLILDGWGYRENTHMNAVYHANTPVLDRLNKEYPNS--LISGSGLDVGLP-DGQMGNSEVGHINIGSGRVVYQELTRIGKSIEDGEFDSNPAFVDAVDKAIAADGAVHIMGLLSPGGVHSHESHIQAMCKMAVARGAKQVYLHAFLDGRDTPPRSAKGSLQAFNELFAEL 176          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PSYA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 62/170 (36.47%), Postives = 93/170 (54.71%), Query Frame = 2
Query:  158 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            +++LDG+G  + DK N I  AD P +D   +  P    L+ A G  VGLP +   GNSEVGH  LGAGR+  Q +  +   +AS   Y++E   N +K +   G  +H++GLLSDGGV S  D ++ +   A   GAK + +H   DGRD    S+  ++  +   + +L
Sbjct:   34 LMILDGFGHREDDKDNAIAAADMPNLDKIYEQYPHG--LISASGEDVGLP-DGQFGNSEVGHMNLGAGRVLYQDSTRISSEVASRDFYKNEALVNAVKAANTLGGNVHIMGLLSDGGVHSNQDHIEAMCHSALVHGAKNVFVHCFLDGRDTPPKSADKYINRLRDHIIKL 200          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 8801) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 67/172 (38.95%), Postives = 89/172 (51.74%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            V +V+LDGWG  +  + N I +A TP MD    S P    L+   G  VGLP    MGNSEVGH  LGAGRI  Q    +  A+    + ++     I          LHLIGL SDGGV S LD L  LL+ A E+   ++ +H++TDGRD      +  V  +E  + E+
Sbjct:    9 VVLVILDGWGYRQSTEANAIALAKTPVMDCLWTSYPRT--LIHTSGKDVGLPN-GQMGNSEVGHLNLGAGRIVPQELVRISDAVEDKSLLRNPALVNICQEVRDRQSKLHLIGLCSDGGVHSHLDHLIGLLELAKEQHLDQVCIHVITDGRDTNTNEGINAVAKLESSIKEI 177          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_CLOTH7.549e-2336.362,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTE7.549e-2336.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB89.860e-2338.372,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB1.288e-2238.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ROSDO1.682e-2234.742,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MICAN1.682e-2239.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST1.682e-2237.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHELP2.197e-2235.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYA22.197e-2236.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP82.197e-2238.952,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
back to top