FC929982

Overview
NameFC929982
Unique NameFC929982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929982_ssr33 microsatellite FC929982_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_BACSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus clausii (strain KSM-K16) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.197e-22
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            VA+++LDG+G  + +K N +  A  P  D +    P     +RA G  VGLP E  MGNSEVGH  +GAGRI  Q    V+L++  G  +++E F    +++K   +   LH+ GLLSDGG+ S +D +  LL  A ++  +R+ +H   DGRDV   S+  +++ ++    E+
Sbjct:    6 VALIILDGFGLREEEKGNAVAHAQKPNFDRYWNEFPHA--TLRADGENVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNLSIREGDFFKNETFIKAMDHVKE--KQSALHIYGLLSDGGIHSHIDHIYALLDMAKQQNVERVYVHGFLDGRDVGPTSAEVYLKGLQDKFDEV 174          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 71/187 (37.97%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGV S  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG  A I
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKGRIASI 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 71/187 (37.97%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGV S  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG  A I
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKGRIASI 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_VIBC3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 71/187 (37.97%), Postives = 102/187 (54.55%), Query Frame = 2
Query:  134 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQI 688
            +S    +A+V+LDGWG  + +  N I+ A TP MDS   + P    L+ A G  VGLP +  MGNSEVGH  +GAGRI  Q    +  A+  G+   ++     I  +   G  +HL+GL+S GGV S  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG  A I
Sbjct:    1 MSAKKPMALVILDGWGYREDNANNAINNARTPVMDSLMANNPHT--LISASGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQDLTRITKAIMDGEFQHNKVLVAAIDKAVAAGKAVHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKGRIASI 183          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_SILPO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter pomeroyi GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 63/169 (37.28%), Postives = 89/169 (52.66%), Query Frame = 2
Query:  152 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN--YIKPSFETGTLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDL 652
            V + +LDGWG       N  ++A TPT D+     P   RL+  HG  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G  + +        +     GT HL+GL+SDGGV   L+ +    +  +  G   + +H +TDGRDV   S+ GF+  +E  L
Sbjct:    7 VVLCILDGWGLSDDKTANAPYLAKTPTFDAIMTKGPHA-RLI-THGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFFDNAALRDFIARTRAAGGTAHLMGLVSDGGVHGHLNHIIAAAQAITNAGVP-VVMHAITDGRDVAPKSAYGFMAELEDRL 171          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_PORPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra purpurea GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 65/178 (36.52%), Postives = 94/178 (52.81%), Query Frame = 2
Query:  113 KLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI-KPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 640
            K K HP       + + +LDGWG     + N I +A TPT+DS  ++ P    L+ A G  VGLP +  MGNSEVGH  +G GR+  Q    +  ++ +   + +   N     +  T T LHLIGL S+GGV S LD L  L+  A  +    + +H++TDGRD    S+  F++ I
Sbjct:    3 KKKVHP-------IVLAILDGWGHSNSHQGNAIKIAKTPTIDSLLETYPNT--LLVASGEEVGLP-KGQMGNSEVGHTTIGGGRVVEQELVKIGNSIENKSFFNNVQLNCACDHAISTQTSLHLIGLCSNGGVHSHLDHLLALIHVAESKKVPNLYIHLITDGRDTNSNSAKSFIKLI 170          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_MAGSM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Magnetococcus sp. (strain MC-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 69/179 (38.55%), Postives = 95/179 (53.07%), Query Frame = 2
Query:  131 QLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETG-TLHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 661
            Q  R   + +V+LDGWG     + N I  A TP MD +  + P     VR  G  VGLP +  MGNSEVGH  LGAGR+  Q    V  A+  G    ++   + I+ + E G  +HL GLLS GGV S  DQ+   ++ A + GA  I +H L DGRD    S++ ++   E+ L +L
Sbjct:    2 QTHRPKPMTLVILDGWGLRDTQENNAIANASTPHMDDWLANRPHAQ--VRTSGRDVGLP-DGQMGNSEVGHLNLGAGRVVYQEFTRVSCAIEDGSFMHNQVLLDAIRAANEAGGAVHLYGLLSPGGVHSHQDQILAAVQCAKQNGASEIYIHALLDGRDTPPQSAMEYMTRFEEGLQKL 177          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_BACHK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis subsp. konkukian GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  155 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGV S ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE 172          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_BACCZ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ZK / E33L) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  155 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGV S ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE 172          
BLAST of FC929982 vs. ExPASy Swiss-Prot
Match: GPMI_BACCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 65/170 (38.24%), Postives = 98/170 (57.65%), Query Frame = 2
Query:  155 AVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGVRSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 658
            A+++LDG+G  +    N +  A  P  D +    P     + A G AVGLP E  MGNSEVGH  +GAGRI  Q    V++A+  G+  ++E F + IK   E GT LHL GLLSDGGV S ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E
Sbjct:    6 ALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFPHT--TLTACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE 172          
The following BLAST results are available for this feature:
BLAST of FC929982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 274
Match NameE-valueIdentityDescription
GPMI_BACSK2.197e-2236.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCM2.869e-2237.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH2.869e-2237.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBC32.869e-2237.972,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILPO2.869e-2237.282,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORPU2.869e-2236.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MAGSM2.869e-2238.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHK2.869e-2238.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCZ2.869e-2238.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCR2.869e-2238.242,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34002E06EF PostHarvC1 Citrus clementina cDNA clone C34002E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929982 ID=FC929982; Name=FC929982; organism=Citrus clementina; type=EST; length=710bp
GGTCCTGGTATTCTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTT
TCTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAG
ATGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACAT
TGTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGT
ATAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAG
TCTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGG
GCTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCAC
TCGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCT
CTGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCC
GTCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
GAGTACGCTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGT
GAGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGA
TGTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATTGAGAAAGATC
TTGCAGAATTGCGTGGGAAAGGTGTTGACGCACAGATTGCATCTGGAGGA
AGCCGCATGT
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