FC929983

Overview
NameFC929983
Unique NameFC929983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929983_ssr22 microsatellite FC929983_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
FC929983_ssr628 microsatellite FC929983_ssr628:628..639. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15502 contig Ccv1_Contig15502:4..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: OMT1_CHRAE (Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 81/178 (45.51%), Postives = 121/178 (67.98%), Query Frame = 3
Query:  162 MLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +  M+LA +S+LPM +K+ IEL +LEI+ +   + +S +EIAS LPT N +A  ++DR+LRLL+ YS +T ++ +  D    RVYGLA VC+YL  N+DGVS+A + L+ QDKV ++  YHLKD +L+G +PF KA+   + FEY   D R   +FN+ M +H+ + MKK+ +  QGF
Sbjct:    2 LFAMQLASASVLPMVLKSAIELDLLEII-RGQDTCMSPTEIASHLPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQ---RVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSS-FEYHGTDPRFNKVFNRGMSDHSTITMKKVFQAYQGF 174          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: OMT2_CHRAE (Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 81/178 (45.51%), Postives = 121/178 (67.98%), Query Frame = 3
Query:  162 MLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            +  M+LA +S+LPM +K+ IEL +LEI+ +   + +S +EIAS LPT N +A  ++DR+LRLL+ YS +T ++ +  D    RVYGLA VC+YL  N+DGVS+A + L+ QDKV ++  YHLKD +L+G +PF KA+   + FEY   D R   +FN+ M +H+ + MKK+ +  QGF
Sbjct:    2 LFAMQLACASVLPMVLKSAIELDLLEII-RGQDTCMSPTEIASHLPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQ---RVYGLAPVCKYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMSS-FEYHGTDPRFNKVFNRGMSDHSTITMKKVFQTYQGF 174          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 83/189 (43.92%), Postives = 123/189 (65.08%), Query Frame = 3
Query:  147 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKAS---PSQLSSSEIASQLPTNNQE---ASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            DEE  M  M+LA SS+LPMT+K  IELG+LE+L K +    + L+  E+ +++P    +   A+ ++DRMLRLLASY  +   +  ++DG   R Y  A VC++L PNEDGVS+A + L+ QDKV ++  Y+LKD +L+G +PF KA+     FEY   DAR   +FN+ M+NH+ ++ KK+L+   GF
Sbjct:   13 DEEACMYAMQLASSSILPMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQM-EDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDFYTGF 199          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 83/187 (44.39%), Postives = 122/187 (65.24%), Query Frame = 3
Query:  147 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPS--QLSSSEIASQLPT--NNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            DEE  M  M+LA +S+LPMT+K  +ELG+LE+L   +P+   L+  E+ ++LP    N +A+ ++DRMLRLLASY  +   +  +KDG   R Y  A V ++L PNEDGVS+A + L+ QDKV ++  Y+LKD +L+G +PF KA+     FEY   D R   +FN+ M+NH+ ++ KK+LE   GF
Sbjct:   13 DEEACMYAMQLASASILPMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQM-EDKDGKYERRYSAAPVGKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGIPFNKAY-GMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGF 197          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 82/184 (44.57%), Postives = 115/184 (62.50%), Query Frame = 3
Query:  147 DEEDFMLIMELAHSSLLPMTMKAIIELGVLEILAKASPSQ-LSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            DE+   L + LA+++  PM +K+  EL +L+I +KA     +S+SEIASQ+   N  A  +LDRMLRLLAS+S LT  L   + G+  RVYG A +C YL  N+   SL P+ +L  DKV ++  +HL D +LEG +PF +AH     F+Y   D R  ++FNQ M +HT LVMKK+L+   GF
Sbjct:   18 DEQLAGLAVTLANAAAFPMILKSAFELKILDIFSKAGEGVFVSTSEIASQIGAKNPNAPVLLDRMLRLLASHSVLTCKLQKGEGGSQ-RVYGPAPLCNYLASNDGQGSLGPLLVLHHDKVMMESWFHLNDYILEGGVPFKRAHGMIQ-FDYTGTDERFNHVFNQGMAHHTILVMKKLLDNYNGF 199          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 68/169 (40.24%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  195 LPMTMKAIIELGVLEILAKASP-SQLSSSEIASQLPTNNQEASTVLDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLL-EGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            LPM ++A IEL V EI+++A P +QLS S+I +++PT N  A+  LDR+LR+L + S L+ +  T K G   RVYGL    R L+ +ED VS+ P+ L   DK  V+  Y++KD +L EG +PF + H   + F+YA K+ R    FNQ+M   + +   ++ ++ +GF
Sbjct:   51 LPMALRAAIELNVFEIISQAGPDAQLSPSDIVAKIPTKNPSAAISLDRILRMLGASSILSVS--TTKSG---RVYGLNEESRCLVASEDKVSVVPMLLFTSDKAVVESFYNIKDVVLEEGVIPFDRTH-GMDFFQYAGKEERVNKSFNQAMGAGSTIAFDEVFKVYKGF 213          
BLAST of FC929983 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.694e-22
Identity = 67/179 (37.43%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  171 MELAHSSLLPMTMKAIIELGVLEILAKASP--SQLSSSEIASQLPTNNQEASTV--LDRMLRLLASYSFLTYNLVTNKDGNVFRVYGLASVCRYLLPNEDGVSLAPIFLLAQDKVSVDPGYHLKDCLLEGTLPFMKAHNAKNPFEYAMKDARRRNLFNQSMRNHTALVMKKILEIXQGF 695
            M L  + + P  + A I+L + EI+AKA+P  + +S SEIAS+LP + Q +     LDRMLRLLASYS LT    T +DG   RVYGL+ V +YL+P+E    LA           +    + K+ +++  +   K  +    +E+  KD +   +FN+SM +  A  MK++LEI  GF
Sbjct:   29 MVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGF 207          
The following BLAST results are available for this feature:
BLAST of FC929983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
OMT1_CHRAE1.963e-3645.51Quercetin 3-O-methyltransferase 1 OS=Chrysospleniu... [more]
OMT2_CHRAE3.349e-3645.51Quercetin 3-O-methyltransferase 2 OS=Chrysospleniu... [more]
COMT1_MAIZE3.349e-3643.92Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
COMT1_SACOF5.712e-3644.39Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
IMT1_MESCR2.653e-3344.57Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
SMT_COPJA3.473e-2540.24(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
CHOMT_MEDSA4.694e-2237.43Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]

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Properties
Property NameValue
Genbank descriptionC34002E07EF PostHarvC1 Citrus clementina cDNA clone C34002E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929983 ID=FC929983; Name=FC929983; organism=Citrus clementina; type=EST; length=696bp
AAACTAATATATCTATACGTGTATATATATAGTTATATACTGAGCGCTCA
TCAACATCATCCATTGCCATTTTGTTAATTTCAGCATATCCTACTCCGAG
AATTAAGATGAATTCATTCCATGACCAACTCATGAAACCACCAAACGATG
AGGAAGATTTCATGCTGATCATGGAGCTTGCCCACAGCTCATTACTTCCG
ATGACCATGAAAGCTATCATCGAGCTTGGTGTGTTAGAGATTTTAGCTAA
AGCTAGTCCATCTCAGCTTTCTTCTTCTGAGATTGCATCTCAGCTGCCCA
CAAATAACCAAGAAGCCTCAACAGTACTTGATCGAATGTTACGACTCCTT
GCTAGTTACTCTTTCCTAACATATAATCTTGTCACAAATAAAGATGGAAA
TGTTTTCAGAGTATATGGTTTAGCGTCCGTTTGCAGATATTTGCTTCCAA
ATGAAGACGGAGTTTCTCTTGCTCCCATTTTCCTCTTAGCTCAGGACAAA
GTTTCTGTAGATCCTGGGTACCACTTGAAAGATTGTTTATTGGAAGGGAC
CCTGCCTTTTATGAAGGCACATAATGCAAAAAATCCATTTGAGTATGCTA
TGAAAGATGCTAGAAGACGGAACCTCTTCAATCAATCAATGCGCAATCAT
ACGGCTTTAGTTATGAAGAAAATTCTTGAAATCTANCAAGGATTTG
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