FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929986_ssr424 microsatellite FC929986_ssr424:424..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT++TA EAA AYD AA+R+RGSKA+LNFP  +G
Sbjct:   97 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 160          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 45/64 (70.31%), Postives = 57/64 (89.06%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT++TA EAA AYD AA+R+RGSKA+LNFP  +G
Sbjct:  101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.351e-22
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            K YRGVRRRPWG+YAAEIRD  R G+RVWLGTF+TA EAA AYD AAFR+RG+KA+LNFP E+
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI 119          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            EEK YRGVR+RPWG++AAEIRD  RKG RVWLGTFDTA  AA AYD AAF L+GS A+LNFP +V
Sbjct:   78 EEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADV 142          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            +HYRGVRRRPWG++AAEIRDP + G+RVWLGT++T  EAA AYD AA+R+RGSKA LNFP  +G
Sbjct:  103 RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG 166          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLD 662
            ++  +RGVRRRPWG++AAEIRDP+R G+R+WLGTF+TA EAA+AYD AAF LRG  AILNFP E    +D
Sbjct:   16 KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNEYYPRMD 85          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 49/64 (76.56%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPL 641
            ++E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTFDTA EAAKAYD AA   RG KA  NFPL
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPL 84          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            +HYRGVR+RPWG++AAEIRDP + G+RVWLGT+++A EAA AY  AAFR+RG+KA+LNFP  +G
Sbjct:  105 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG 168          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLE 644
            E   YRGVRRRPWG+YAAEIRD  + G RVWLGTFDTA EAA+AYD AA+ +RG  AILNFP E
Sbjct:   11 EHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            ++E HYRGVR+RPWGRYAAEIRDP +K SRVWLGTFDTA EAAKAYD AA   RG KA  NFP
Sbjct:   22 VKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF2_TOBAC2.566e-2270.31Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY2.566e-2270.31Ethylene-responsive transcription factor 2 OS=Nico... [more]
PTI5_SOLLC3.351e-2276.19Pathogenesis-related genes transcriptional activat... [more]
ERF94_ARATH1.273e-2173.85Ethylene-responsive transcription factor ERF094 OS... [more]
ERF1_TOBAC2.172e-2170.31Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF98_ARATH4.838e-2165.71Ethylene-responsive transcription factor ERF098 OS... [more]
ERF4_NICSY4.838e-2176.56Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF1_SOLLC4.838e-2167.19Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF96_ARATH1.408e-2071.88Ethylene-responsive transcription factor ERF096 OS... [more]
ERF4_TOBAC1.408e-2076.19Ethylene-responsive transcription factor 4 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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