FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929986_ssr424 microsatellite FC929986_ssr424:424..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 3 
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            ++ +RGVR+R WG + +EIR P  K +R+WLGTF+TA +AA+AYD AA  + G +A  NFP
Sbjct:    5 QQRFRGVRQRHWGSWVSEIRHPLLK-TRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64
[Close]
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 30/61 (49.18%), Postives = 44/61 (72.13%), Query Frame = 3 
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            +  Y+GVR+R WG++ +EIR P+ +  R+WLG++DT  +AA+A+D A F LRG  A  NFP
Sbjct:   18 QSKYKGVRKRKWGKWVSEIRLPHSR-ERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFP 77
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF03_ARATH5.928e-1152.46Ethylene-responsive transcription factor ERF003 OS... [more]
ERF18_ARATH7.743e-1149.18Ethylene-responsive transcription factor ERF018 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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