FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 49/100 (49.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  348 SCSNVNDDADNPVAVKNKDPXXXXXXXXXXXXXXIEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            S  N++   DN  +V N                 +  +HYRGVR+RPWG++AAEIRDP +K +RVWLGTF+TA  AA AYD AA + +GSKA LNFP  V
Sbjct:   51 SHDNISSIDDNYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.529e-19
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLE 644
            +  YRG+R+RPWG++AAEIRDP RKGSR WLGTFDTA EAA+AYD AA R+RG+KA +NFP E
Sbjct:  125 KNQYRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVG 650
            K YRGVR+RPWG++AAEIRDP+ K +RVWLGTF+TA  AA+AYD AA R RGSKA LNFP  VG
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDPH-KATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGG 653
            +HYRGVR+RPWG++AAEIRDP +K +RVWLGTF+TA EAA AYD AA + +G+KA LNFP  V G
Sbjct:   37 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQG 100          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            +++ YRGVR+RPWG++AAEIRDP+R  +RVWLGTFDTA  AA+AYD AA R RG+KA LNFP +V
Sbjct:   73 KKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDV 136          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            +E  YRGVR+RPWGRYAAEIRDP +K +RVWLGTFDTA EAA+AYD AA   RG+KA  NFP
Sbjct:   21 KEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSK 668
            +   Y+G+RRRPWGR+AAEIRDP  KG RVWLGTF+TA EAA+AYD  A R+RG+KA LNFP E  G   +K
Sbjct:   21 QSSRYKGIRRRPWGRWAAEIRDPI-KGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAK 91          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLE 644
            +  YRG+R+RPWG++AAEIRDP R+G+R+WLGTF TA EAA+AYD AA R+RGSKA +NFP E
Sbjct:  122 KNQYRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE 183          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLE 644
            ++E  +RGVR+RPWGR+AAEIRDP +K +RVWLGTFD+A EAA+AYD+AA  LRG KA  NFP++
Sbjct:   23 VKEIRFRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPID 86          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.539e-18
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            E HYRGVR+RPWGRYAAEIRDP +K +RVWLGTFDT  EAA AYD AA  LRG KA  NFP
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
EF114_ARATH3.467e-1949.00Ethylene-responsive transcription factor ERF114 OS... [more]
RAP22_ARATH4.529e-1971.43Ethylene-responsive transcription factor RAP2-2 OS... [more]
RAP26_ARATH5.915e-1971.88Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF113_ARATH5.915e-1967.69Ethylene-responsive transcription factor ERF113 OS... [more]
EF110_ARATH7.725e-1967.69Ethylene-responsive transcription factor ERF110 OS... [more]
ERF78_ARATH1.721e-1872.58Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF73_ARATH1.721e-1863.89Ethylene-responsive transcription factor ERF073 OS... [more]
RA212_ARATH2.248e-1868.25Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF82_ARATH5.007e-1866.15Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF81_ARATH6.539e-1875.41Ethylene-responsive transcription factor 12 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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