FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929986_ssr424 microsatellite FC929986_ssr424:424..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15080 contig Ccv1_Contig15080:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            YRG+R+RPWG++AAEIRDP RKG RVWLGTF+TA EAA AYD AA ++RG KA LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            YRGVR+RPWGRYAAEIRDP +K SRVWLGTFDT  EAA+AYD  A   RG+KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            + YRGVR+RPWG++AAEIRDP  K +RVWLGTFD A  AA+AYD AA R RG+KA LNFP  V
Sbjct:  183 RRYRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV 244          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            YRG+R+RPWG++AAEIRDP+ KG RVWLGTF TA EAA+AYD AA ++RG KA LNFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPS-KGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGGT 656
            +E  YRGVR+RPWGRYAAEIRDP +K +RVWLGTFDTA +AA+AYD AA   RG KA  NF + VG +
Sbjct:   27 KEIRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSS 93          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            + +RGVR+RPWG++AAEIRDP+R+  RVWLGTFDTA EAA  YDNAA +LRG  A LNFP
Sbjct:   85 RKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGS-KAILNFPLE 644
            + YRGVR+RPWG++AAEIRD  R G RVWLGTF TA EAA AYD AA R+RG+ KA  NF LE
Sbjct:  108 RKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPL 641
            +E  +RGVR+RPWGR+AAEIRDP +K +RVWLGTFD+A +AA+AYD AA  LRG KA  NFPL
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPL 641
            K +RGVR+RPWGR+AAEIRDP R G RVWLGT+DT  EAA  YD AA +L+G  A+ NFP+
Sbjct:   96 KKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPV 155          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.233e-16
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            +  +RG+R+RPWG++AAEIRDP RKG RVWLGTF++A EAA+AYD  A R+RG KA +NFP
Sbjct:  117 KNQFRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RAP23_ARATH1.457e-1774.14Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF76_ARATH1.457e-1774.14Ethylene-responsive transcription factor 11 OS=Ara... [more]
ABR1_ARATH1.903e-1768.25Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF71_ARATH2.485e-1772.41Ethylene-responsive transcription factor ERF071 OS... [more]
ERF79_ARATH3.245e-1766.18Ethylene-responsive transcription factor 8 OS=Arab... [more]
CRF1_ARATH4.239e-1770.00Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF91_ARATH5.536e-1768.25Ethylene-responsive transcription factor ERF091 OS... [more]
ERF3_TOBAC7.230e-1768.25Ethylene-responsive transcription factor 3 OS=Nico... [more]
PTI6_SOLLC1.233e-1665.57Pathogenesis-related genes transcriptional activat... [more]
ERF1_ORYSJ1.233e-1665.57Ethylene-responsive transcription factor 1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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