FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            YRGVR+RPWG++AAEIRDP R  +RVWLGTF+TA +AA+AYD AA   RG +A LNFP
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            EK Y+G+R R WG++ AEIR+PN++ SR+WLG++ TAV AA+AYD A F LRG  A LNFP EV
Sbjct:   33 EKRYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPL 641
            K +RGVR+RPWG++AAEIRDP ++  R+WLGTF+TA EAA  YDNAA RLRG  A+ NF +
Sbjct:  123 KKFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLE 644
            +K YRGVR+RPWG++AAEIRDP ++  R+WLGTF TA EAA  YDNAA +LRG  A+ NF ++
Sbjct:  114 QKKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            ++ K YRGVR+RPWG++AAEIRDP+ + +R+WLGTF TA EAA AYD AA  L+G KA+ NF
Sbjct:  100 VKPKKYRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            I  K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD  AF+LRG  A LNFP
Sbjct:  138 IATKLYRGVRQRQWGKWVAEIRKP-RSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            YRGVRRRPWGRYAAEIRDP  K  R WLGTFDTA +AA AYD+AA   RG+KA  NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSK-ERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD AAF+LRG  A LNFP
Sbjct:  141 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            EK +RGVR+RPWG++AAEIRDP ++  R+WLGT++TA EAA  YDNAA +LRG  A+ NF
Sbjct:  119 EKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 43/57 (75.44%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            YRGVRRRPWGRYAAEIRDP  K  R WLGTFDTA EAA AYD AA  +RG KA  NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSK-ERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
EF109_ARATH1.611e-1668.97Ethylene-responsive transcription factor ERF109 OS... [more]
RAP29_ARATH3.588e-1660.94Ethylene-responsive transcription factor RAP2-9 OS... [more]
CRF3_ARATH3.588e-1663.93Ethylene-responsive transcription factor CRF3 OS=A... [more]
CRF4_ARATH4.686e-1661.90Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF6_ARATH6.121e-1662.90Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF54_ARATH1.364e-1565.08Ethylene-responsive transcription factor ERF054 OS... [more]
ESR1_ARATH1.781e-1573.68Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF55_ARATH3.038e-1568.33Ethylene-responsive transcription factor ERF055 OS... [more]
CRF2_ARATH3.038e-1563.33Ethylene-responsive transcription factor CRF2 OS=A... [more]
ESR2_ARATH3.967e-1575.44Ethylene-responsive transcription factor ESR2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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