FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 43/62 (69.35%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            IEE  Y GVRRRPWGRYAAEIR+P  K  R WLGTFDTA EAA AYD AA  +RG  A  NF
Sbjct:   34 IEEIKYVGVRRRPWGRYAAEIRNPTTK-ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF 94          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            E   + GVRRRPWGRYAAEIRDP  K  R WLGTFDTA EAA AYD AA  +RG++A  NF
Sbjct:   32 EPGRFLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAHEAALAYDRAALSMRGTQARTNF 91          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD  AF+LRG  A LNFP
Sbjct:  185 KLYRGVRQRHWGKWVAEIRKP-RNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP 243          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            + GVRRRPWGRYAAEIRDP  K  R WLGTFDTA EAA AYD AA  +RG++A  NF
Sbjct:   20 FLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD AA++LRG  A LNFP
Sbjct:  150 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 208          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRGVR+R WG++ AEIR P R  +R+WLGTFDTA EAA AYD AA++LRG  A LNFP
Sbjct:   81 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 139          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            +K YRGVR+R WG++ AEIR P  + +R+WLGTFDTA EAA AYD AA++LRG  A LNFP
Sbjct:   90 QKLYRGVRQRHWGKWVAEIRLPKNR-TRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFP 149          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRG+RRR WG++ AEIR+PN++ SR+WLG++ T + AA+AYD A F LRG  A LNFP
Sbjct:   29 KPYRGIRRRKWGKWVAEIREPNKR-SRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFP 87          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            Y+GVR+R WG++ AEIR+PNR G+R+WLGTFDT+ EAA AYD+AA +L G +A LN P
Sbjct:   42 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLP 98          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  456 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEVGG 653
            +K Y+G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD A F LRG  A LNFP  + G
Sbjct:   27 DKPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAG 91          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF87_ARATH3.967e-1569.35Ethylene-responsive transcription factor ERF087 OS... [more]
ERF86_ARATH5.181e-1567.21Ethylene-responsive transcription factor ERF086 OS... [more]
ERF53_ARATH5.181e-1566.67Ethylene-responsive transcription factor ERF053 OS... [more]
LEP_ARATH1.154e-1470.18Ethylene-responsive transcription factor LEP OS=Ar... [more]
RAP24_ARATH1.508e-1466.67Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF58_ARATH1.508e-1466.67Ethylene-responsive transcription factor ERF058 OS... [more]
ERF60_ARATH1.969e-1463.93Ethylene-responsive transcription factor ERF060 OS... [more]
RAP21_ARATH2.571e-1460.00Ethylene-responsive transcription factor RAP2-1 OS... [more]
DRE2D_ARATH3.358e-1463.79Dehydration-responsive element-binding protein 2D ... [more]
RA210_ARATH7.482e-1453.03Ethylene-responsive transcription factor RAP2-10 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
back to top