FC929986

Overview
NameFC929986
Unique NameFC929986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 41/62 (66.13%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  450 IEEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            ++E  Y GVRRRPWGRYAAEIR+P  K  R WLGTFDTA EAA AYD AA  + GS A  NF
Sbjct:   16 LQEGKYLGVRRRPWGRYAAEIRNPFTK-ERHWLGTFDTAEEAAFAYDVAARSISGSLATTNF 76          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            ++K YRGVR+R WG++ AEIR P  +  RVWLGT+DTA  AA AYD AA++LRG  A LNFP
Sbjct:  132 KKKLYRGVRQRHWGKWVAEIRLPQNR-MRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP 192          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRGVR+R WG++ AEIR P  + +R+WLGTF+TA EAA AYD AA ++RG  A LNFP
Sbjct:  109 KLYRGVRQRQWGKWVAEIRLPKNR-TRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFP 167          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            +RGVR+R WG++ AEIR+PNR GSR+WLGTF TA EAA AYD AA  + G  A LNFP
Sbjct:   79 FRGVRQRIWGKWVAEIREPNR-GSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP 135          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNF 635
            YRGVR+RPWG++AAEIRDP+ + +R+WLGTF TA EAA  YD AA R++G  A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  459 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            K YRGVR+R WG++ AEIR P R  +RVWLGTF+TA +AA AYD AA+ LRG  A LNFP
Sbjct:  230 KLYRGVRQRHWGKWVAEIRLP-RNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 3
Query:  453 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            E+  YRG R R WG++ +EIR+P RK SR+WLGTF TA  AA+A+D AA  ++GS AILNFP
Sbjct:   22 EKGVYRGARMRSWGKWVSEIREP-RKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFP 82          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFP 638
            YRGVR+R WG++ AEIR P  + +R+WLGTF+TA +AA AYD AAF+LRG  A LNFP
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNR-TRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILN 632
            +RGVR+R WG++ AEIR+PNR G+R+WLGTF+T+VEAA AYD AA +L G +A LN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNR-GTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of FC929986 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  465 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFDTAVEAAKAYDNAAFRLRGSKAILNFPLEV 647
            Y GVR+R WG++ +EIR+P RK SR+WLG+F     AAKAYD AAF L+G KA LNFP E+
Sbjct:   45 YHGVRKRRWGKWVSEIREP-RKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104          
The following BLAST results are available for this feature:
BLAST of FC929986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
ERF88_ARATH7.482e-1466.13Ethylene-responsive transcription factor ERF088 OS... [more]
ERF61_ARATH7.482e-1461.29Ethylene-responsive transcription factor ERF061 OS... [more]
ERF57_ARATH9.772e-1461.67Ethylene-responsive transcription factor ERF057 OS... [more]
DRE2A_ARATH9.772e-1465.52Dehydration-responsive element-binding protein 2A ... [more]
CRF5_ARATH9.772e-1463.16Ethylene-responsive transcription factor CRF5 OS=A... [more]
ERF62_ARATH1.276e-1365.00Ethylene-responsive transcription factor ERF062 OS... [more]
ERF42_ARATH1.276e-1359.68Ethylene-responsive transcription factor ERF042 OS... [more]
ERF56_ARATH1.667e-1363.79Ethylene-responsive transcription factor ERF056 OS... [more]
DRE2G_ARATH1.667e-1364.29Dehydration-responsive element-binding protein 2G ... [more]
ERF23_ARATH2.177e-1360.66Ethylene-responsive transcription factor ERF023 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34002E10EF PostHarvC1 Citrus clementina cDNA clone C34002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929986 ID=FC929986; Name=FC929986; organism=Citrus clementina; type=EST; length=671bp
ACTCAAATACACCAAACCAATTTCCATTTACATTTCATCTTACCTTCAAT
ATGGCATCTCTGAATGAAGCATCAACTTTAGAACTCATCAGCCAGTATCT
TCTCGCTGATCAGTACTTCACTTCTTCAATTGATCATACCCATAGCTTCA
AAAATATCTCAAACCTTCCTCAAAGCCCGAGCTTATTCAACAACCCAACA
ACAACTACAACAGCAACAACAGTTACTACTACAACTGATCGTGATAATAT
AAACAGCAGAAACAAGCCTTCAAGCACTTTAAAACAACGGAAGCCGGCCT
GTGTAAAAAACGTAACCATACCCCAAACTACAAGCTTCAATTTGATGAGC
TGCTCCAATGTTAATGATGATGCTGATAACCCAGTTGCTGTGAAAAATAA
AGATCCGGATGCTGCTGCTGATGATAATAATAATAATAATAATAACAATA
TTGAGGAAAAGCATTACAGAGGAGTAAGGAGACGGCCGTGGGGCAGGTAT
GCAGCTGAAATCCGGGACCCGAATAGAAAAGGGAGCCGGGTTTGGCTTGG
AACTTTTGATACTGCCGTTGAAGCCGCCAAAGCTTATGACAACGCTGCGT
TTAGGCTGCGTGGAAGCAAAGCGATATTGAATTTCCCTCTCGAAGTTGGC
GGGACTTTGGATTCTAAAGTG
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