FC929989

Overview
NameFC929989
Unique NameFC929989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:783..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG D K++ G+ +Y+ VT+K YWQ ++  + +GN+ T +C+GGC AIVD+GTSLL GP   V E+  AIG   ++  E
Sbjct:  244 MLGGTDSKYYHGELSYLNVTRKAYWQVHMDQLEVGNELT-LCKGGCEAIVDTGTSLLVGPVEEVKELQKAIGAVPLIQGE 322          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG----EGVVSAECKLV 252
            + GG DPK++ G   YVPVT++ YWQ ++  + IG+Q T +C+ GC AIVD+GTSL+ GP   V  +  AIG     +G    +CK V
Sbjct:  232 LLGGTDPKYYTGDFNYVPVTRQAYWQIHMDGMSIGSQLT-LCKDGCEAIVDTGTSLITGPPAEVRALQKAIGAIPLIQGEYMIDCKKV 318          

HSP 2 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 26/61 (42.62%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  520 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPP 702
            ++P   GE +IDC ++PT+P +SF +G K ++L+ EQY+LK  +G   +C+SG M  ++PP
Sbjct:  303 AIPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPP 363          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_CHICK (Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG DPK++ G  ++V VT+K YWQ ++  + + N  T +C+GGC AIVD+GTSL+ GPT  V E+  AIG + ++  +
Sbjct:  234 LLGGTDPKYYSGDFSWVNVTRKAYWQVHMDSVDVANGLT-LCKGGCEAIVDTGTSLITGPTKEVKELQTAIGAKPLIKGQ 312          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    4 FGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 243
            FGG DP HF G   ++PVTK+GYWQ  L  I +G+ +   C  GC AIVD+GTSL+ GP   + ++  AIG    +G  + +C
Sbjct:  235 FGGYDPSHFSGSLNWIPVTKQGYWQIALDGIQVGD-TVMFCSEGCQAIVDTGTSLITGPPKKIKQLQEAIGATPMDGEYAVDC 316          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    4 FGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAECK 246
            FGG D  HF G   +VPVTK+GYWQ  L +I +G  S   C  GC AIVD+GTSL+ GP+  + ++  AIG    +G  + EC+
Sbjct:  233 FGGYDSSHFSGSLNWVPVTKQGYWQIALDEIQVGG-SPMFCPEGCQAIVDTGTSLITGPSDKIIQLQAAIGATPMDGEYAVECE 315          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG D K++KG  +Y+ VT+K YWQ ++  + +G+  T +C+GGC AIVD+GTSL+ GP   V E+  AIG   ++  E
Sbjct:  244 MLGGTDSKYYKGPLSYLNVTRKAYWQVHMEQVDVGSSLT-LCKGGCEAIVDTGTSLIVGPVDEVRELQKAIGAVPLIQGE 322          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 243
            +FGG D  HF G   +VPVTK+ YWQ  L +I +G  +   C  GC AIVD+GTSL+ GP+  + ++ +AIG    +G  + EC
Sbjct:  237 IFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGG-TVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVDGEYAVEC 319          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG D K+++G  TY  VT++ YWQ ++  + +G+  T VC+GGC AIVD+GTSL+ GP   V E++ AIG   ++  E
Sbjct:  219 MLGGTDSKYYRGSLTYHNVTRQAYWQIHMDQLDVGSSLT-VCKGGCEAIVDTGTSLMVGPVDEVRELHKAIGAVPLIQGE 297          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_RAT (Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG D +++ G+ +Y+ VT+K YWQ ++  + +G++ T +C+GGC AIVD+GTSLL GP   V E+  AIG   ++  E
Sbjct:  241 MLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSELT-LCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGE 319          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    4 FGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG-----GEGVVSAECKLV 252
            FG +D   + G  TYVP+T + YW+F + D  I  QS G C   C AI DSGTSL+AGP   +T +N  +G     GEGV S +C ++
Sbjct:  219 FGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLIAGPMADITALNEKLGAVILNGEGVFS-DCSVI 305          
The following BLAST results are available for this feature:
BLAST of FC929989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CATD_MOUSE1.270e-1445.00Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_CLUHA1.658e-1444.32Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHICK1.658e-1443.75Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1[more]
CATE_RAT2.829e-1444.58Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
CATE_RABIT2.829e-1446.43Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
CATD_CANFA6.302e-1443.75Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATE_HUMAN8.230e-1444.05Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CATD_SHEEP8.230e-1443.75Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
CATD_RAT1.075e-1342.50Cathepsin D OS=Rattus norvegicus GN=Ctsd PE=1 SV=1[more]
CATD_DICDI1.075e-1344.32Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]

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Properties
Property NameValue
Genbank descriptionC34002F01EF PostHarvC1 Citrus clementina cDNA clone C34002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929989 ID=FC929989; Name=FC929989; organism=Citrus clementina; type=EST; length=704bp
GTTTTTGGTGGTGTTGATCCAAAGCACTTTAAAGGGAAGCATACCTATGT
TCCTGTTACTAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATATTAA
TTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCATTGTG
GACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTGAAAT
CAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAGCTAG
TTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGGGCTA
CTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATGGCGC
TGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAACGTAT
CAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGTTTGG
GTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCAGTTA
TATAAATGAGTTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCAATTA
TTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCATCGGA
GACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCGGAGA
AGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTGCCTC
CTCC
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