FC929989

Overview
NameFC929989
Unique NameFC929989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:783..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG DPK++ G   YV VT++ YWQ  +  + +G+Q + +C GGC AIVDSGTSL+ GP+  V  +  AIG   ++  E
Sbjct:  232 LLGGTDPKYYTGDFNYVNVTRQAYWQIRVDSMAVGDQLS-LCTGGCEAIVDSGTSLITGPSVEVKALQKAIGAFPLIQGE 310          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 258
            VFGG+D  +F G   ++PV+ +GYWQ ++  I++  Q    C  GC AI+D+GTSL+AGP   + +I  A+G      G  S  C  +++
Sbjct:  227 VFGGIDESYFTGSINWIPVSYQGYWQISMDSIIVNKQEI-ACSSGCQAIIDTGTSLVAGPASDINDIQSAVGANQNTYGEYSVNCSHILA 315          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVC-EGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            VFGGVD   + G+ T++PVT++ YWQ  + D LIGNQ++G C   GC  IVD+GTSLL  P   + E+   IG +
Sbjct:  229 VFGGVDENLYTGELTWIPVTQELYWQITIDDFLIGNQASGWCSSSGCQGIVDTGTSLLVMPAQYLNELLQTIGAQ 303          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG----GEGVVSAECKLV 252
            +FGG+D  ++ G   +VP++ +GYWQ  +  I +  QS   C GGC AIVD+GTSLL+GPT  +  I   IG     +G ++  C  +
Sbjct:  227 MFGGIDSSYYTGSLNWVPLSSEGYWQITVDSITMNGQSIA-CNGGCQAIVDTGTSLLSGPTNAIANIQSKIGASQNSQGQMAVSCSSI 313          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    4 FGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG---EGVVSAEC 243
            FGG DP HF G   ++PVTK+ YWQ  L  I +G+ +   C  GC AIVD+GTSL+ GP   +  +  AIG    +G  + +C
Sbjct:  234 FGGYDPSHFSGSLNWIPVTKQAYWQIALDGIQVGD-TVMFCSEGCQAIVDTGTSLITGPPDKIKHLQEAIGATPIDGEYAVDC 315          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 FGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 216
            FGG DP HF G   +VPVTK+ YWQ  L  I +G+ S   C  GC AIVD+GTSL+ GP   + ++  A+G
Sbjct:  228 FGGYDPSHFSGSLNWVPVTKQAYWQIALDGIQVGD-SVMFCSEGCQAIVDTGTSLITGPPGKIKQLQEALG 297          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG+D K++KG   Y  VT+K YWQ ++  + +G+  T +C+GGC AIVD+GTSL+ G    V E+  AIG   ++  E
Sbjct:  181 MLGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVGSSLT-LCKGGCEAIVDTGTSLIVGQPEEVRELGKAIGAVPLIQGE 259          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            + GGVDP+ + G+ T+ PVT++ YWQ  + +  IGNQ+TG C  GC AIVD+GT LLA P   ++    A G +
Sbjct:  229 ILGGVDPQLYSGQITWTPVTQEVYWQIGIEEFAIGNQATGWCSQGCQAIVDTGTFLLAVPQQYMSAFLQATGAQ 302          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEG-GCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            VFGGVD   + G+ T+VPVT++ YWQ  + D LIG+Q++G C   GC  IVD+GTSLL  P   ++E+   IG +
Sbjct:  229 VFGGVDKNLYTGEITWVPVTQELYWQITIDDFLIGDQASGWCSSQGCQGIVDTGTSLLVMPAQYLSELLQTIGAQ 303          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE----GVVSAECKLVVS 258
            +FGGVD   + G+  + PVT++ YWQ  + + LIG Q+TG C+ GC AIVD+GTSLL  P   ++ +  A G +    G ++  C  + S
Sbjct:  227 IFGGVDNSLYTGQIFWAPVTQELYWQIGVEEFLIGGQATGWCQQGCQAIVDTGTSLLTVPQQFMSALQQATGAQQDQYGQLAVNCNSIQS 316          
The following BLAST results are available for this feature:
BLAST of FC929989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CATD_CHIHA1.075e-1343.75Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
PEPE_CHICK1.833e-1337.78Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1[more]
PEPC_MOUSE1.833e-1348.00Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPA_SORUN2.395e-1339.77Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
CATE_MOUSE2.395e-1343.37Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
CATE_CAVPO2.395e-1349.30Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
CATD_PIG2.395e-1342.50Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
PEPC_MONDO3.127e-1345.95Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PEPC_RAT4.085e-1348.00Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPC_SUNMU6.967e-1340.00Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34002F01EF PostHarvC1 Citrus clementina cDNA clone C34002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929989 ID=FC929989; Name=FC929989; organism=Citrus clementina; type=EST; length=704bp
GTTTTTGGTGGTGTTGATCCAAAGCACTTTAAAGGGAAGCATACCTATGT
TCCTGTTACTAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATATTAA
TTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCATTGTG
GACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTGAAAT
CAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAGCTAG
TTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGGGCTA
CTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATGGCGC
TGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAACGTAT
CAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGTTTGG
GTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCAGTTA
TATAAATGAGTTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCAATTA
TTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCATCGGA
GACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCGGAGA
AGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTGCCTC
CTCC
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