FC929989

Overview
NameFC929989
Unique NameFC929989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:783..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG---GEGVVSAECKLV 252
            VFGG D   F G+  +VPVT +GYWQ  L ++ I N     C GGC AIVD+GTSL+ GP+  + ++ + IG     G    +C ++
Sbjct:  228 VFGGFDASRFSGQLNWVPVTNQGYWQIQLDNVQI-NGEVLFCSGGCQAIVDTGTSLITGPSSDIVQLQNIIGASAANGDYEVDCSVL 313          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVS 234
            +FGG+D  ++ G   +VPV+ +GYWQ  +  I I N  T  C   C A+VD+GTSLLAGPT  +++I   IG      GE ++S
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSHEGYWQITMDSITI-NGETIACADSCQAVVDTGTSLLAGPTSAISKIQSYIGASKNLLGENIIS 309          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG D K++KG  +Y+ VT+K YWQ +L  + + +  T +C+ GC AIVD+GTSL+ GP   V E+  AIG   ++  E
Sbjct:  246 MLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLT-LCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGE 324          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQ 261
            V GG DP H+    T+VPVT   YWQ ++  + +G   T +C  GCAAI+D+GTSL+ GPT  +  ++ AIGG  +++ E  ++ S+
Sbjct:  234 VLGGSDPAHYIPPLTFVPVTVPAYWQIHMERVKVGPGLT-LCAKGCAAILDTGTSLITGPTEEIRALHAAIGGIPLLAGEYIILCSE 319          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 216
            VFGG D   F G+  +VPVT +GYWQ  L +I I N     C GGC AIVD+GTS++ GP+  + ++   IG
Sbjct:  228 VFGGFDASRFSGQLNWVPVTNQGYWQIQLDNIQI-NGEVVFCSGGCQAIVDTGTSMITGPSSDIVQLQSIIG 298          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            + GG D K+++G   +  VT++ YWQ ++  + +G+  T VC+GGC AIVD+GTSL+ GP   V E+  AIG   ++  E
Sbjct:  224 MLGGTDSKYYRGSLMFHNVTRQAYWQIHMDQLDVGSSLT-VCKGGCEAIVDTGTSLIVGPVEEVRELQKAIGAVPLIQGE 302          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDL 273
            +FG +D  ++ G   +VPV+ +GYWQ  +  I +  +S   C  GC AIVD+GTSLLAGPT  ++ I   IG     S E  +  S    L
Sbjct:  212 IFGDIDSSYYSGSLNWVPVSVEGYWQITVDSITMNGESIA-CSDGCQAIVDTGTSLLAGPTTAISNIQSYIGASEDSSGEVVISCSSIDSL 301          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 40/101 (39.60%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 285
            +FGG+D  ++ G   +VPV+ +GYWQ ++  I + N  T  C  GC AIVD+GTSLL GPT  +  I   IG      GE VVS      +S   D+++ +
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITM-NGKTIACAKGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGEMVVSCS---AISSLPDIVFTI 324          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVSQYGDLIWDLLVSGLLPEKVCQQIGLCAFNGAEY 357
            +FGG+D  ++ G   +VPV+ +GYWQ  +  + +  Q+   C  GC AIVD+GTSLLAGPT  +  I   IG             + YG ++        LP+ V         NG +Y
Sbjct:  226 MFGGIDSSYYSGNLNWVPVSVEGYWQITVDSVTMNGQAIA-CSDGCQAIVDTGTSLLAGPTNAIANIQSYIGAS----------QNSYGQMVISCSAINSLPDIV------FTINGIQY 327          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            VFGGVD   + G+  + PVT++ YWQ  +   LIG Q+TG C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct:  227 VFGGVDNSLYTGQIFWTPVTQELYWQIGVEQFLIGGQATGWCSQGCQAIVDTGTSLLTVPQQYLSALQQATGAQ 300          
The following BLAST results are available for this feature:
BLAST of FC929989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CATEA_XENLA6.967e-1341.38Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
PEPA1_RABIT1.188e-1242.86Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATD_HUMAN1.188e-1242.50Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
NAPSA_HUMAN1.552e-1241.38Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATEB_XENLA1.552e-1247.22Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CATD_BOVIN1.552e-1241.25Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
PEPA_BOVIN2.027e-1239.56Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPA4_MACFU2.027e-1239.60Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_CANFA2.648e-1233.61Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
PEPC_SORUN3.458e-1245.95Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34002F01EF PostHarvC1 Citrus clementina cDNA clone C34002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929989 ID=FC929989; Name=FC929989; organism=Citrus clementina; type=EST; length=704bp
GTTTTTGGTGGTGTTGATCCAAAGCACTTTAAAGGGAAGCATACCTATGT
TCCTGTTACTAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATATTAA
TTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCATTGTG
GACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTGAAAT
CAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAGCTAG
TTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGGGCTA
CTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATGGCGC
TGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAACGTAT
CAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGTTTGG
GTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCAGTTA
TATAAATGAGTTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCAATTA
TTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCATCGGA
GACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCGGAGA
AGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTGCCTC
CTCC
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