FC929989

Overview
NameFC929989
Unique NameFC929989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:783..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVS 234
            + GG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C GGC AIVD+GTSLL GPT  +  I   IG      GE V+S
Sbjct:  225 LLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE-TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVIS 307          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAE 240
            +FGGVDP ++ G+  +VPV+K  YWQ ++  I I N     C+GGC AIVD+GTSLL GP   V  I   I      S E
Sbjct:  226 MFGGVDPSYYTGELHWVPVSKPLYWQISMDSISI-NGKVIACDGGCQAIVDTGTSLLLGPQDAVLNIQEIIQARRSTSGE 304          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGEGVVSAECKLVVS 258
            +FGG+D  ++ G   +VP++ +GYWQ  +  I +  Q+   C G C AIVD+GTSLL+GP   +  I  +IG     +A  ++VVS
Sbjct:  227 IFGGIDSSYYTGNLNWVPLSSEGYWQITVDSITMNGQAIA-CSGSCQAIVDTGTSLLSGPNNAIANIQKSIGAS--QNANGQMVVS 309          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 285
            +FGG+D  ++ G   +VPV+ +GYWQ ++  I +  ++   C  GC AIVD+GTSLL GPT  +  I   IG      GE VVS      +S   D+++ +
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEAI-ACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGEMVVSCS---AISSLPDIVFTI 324          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 285
            +FGG+D  ++ G   +VPVT +GYWQ  +  I +  ++   C  GC AIVD+GTSLL GPT  +  I   IG      G+ VVS      +S   D+++ +
Sbjct:  228 IFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGEAI-ACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCS---AISSLPDIVFTI 324          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 285
            +FGG+D  ++ G   +VPV+ +GYWQ ++  I +  ++   C  GC AIVD+GTSLL GPT  +  I   IG      GE VVS      +S   D+++ +
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEAI-ACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGEMVVSCS---AISSLPDIVFTI 324          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 285
            +FGG+D  ++ G   +VPV+ +GYWQ ++  I +  ++   C  GC AIVD+GTSLL GPT  +  I   IG      GE VVS      +S   D+++ +
Sbjct:  228 IFGGIDSSYYTGSLNWVPVSVEGYWQISVDSITMNGEAI-ACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGEMVVSCS---AISSLPDIVFTI 324          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVSAECKLVVSQYGDLIWDL 285
            +FGG+D  ++ G   +VPV+ +GYWQ  +  I +  ++   C  GC AIVD+GTSLL+GPT  +  I   IG      GE VVS      +S   D+++ +
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSAEGYWQITVDSITMNGEAI-ACAEGCQAIVDTGTSLLSGPTSPIANIQSYIGASENSNGEMVVSCS---AISSLPDIVFTI 323          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVS 234
            +FGG+D  ++ G   +VPV+ +GYWQ  +  + I N  T  C   C AIVD+GTSLL GPT  ++ I   IG      GE V+S
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSYEGYWQITMDSVSI-NGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVIS 309          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVS 234
            +FGG+D  ++ G   +VPV+ +GYWQ  +  + I N  T  C   C AIVD+GTSLL GPT  ++ I   IG      GE V+S
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSYEGYWQITMDSVSI-NGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVIS 309          
The following BLAST results are available for this feature:
BLAST of FC929989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PEPA_PIG3.458e-1244.05Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PAG_HORSE3.458e-1246.25Pregnancy-associated glycoprotein OS=Equus caballu... [more]
PEPA_SUNMU4.516e-1239.53Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
PEPA_MACMU4.516e-1237.62Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA_HUMAN4.516e-1237.62Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
PEPA2_MACFU4.516e-1237.62Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA1_MACFU4.516e-1237.62Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_CALJA5.898e-1237.62Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPA4_RABIT5.898e-1242.86Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT5.898e-1242.86Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34002F01EF PostHarvC1 Citrus clementina cDNA clone C34002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929989 ID=FC929989; Name=FC929989; organism=Citrus clementina; type=EST; length=704bp
GTTTTTGGTGGTGTTGATCCAAAGCACTTTAAAGGGAAGCATACCTATGT
TCCTGTTACTAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATATTAA
TTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCATTGTG
GACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTGAAAT
CAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAGCTAG
TTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGGGCTA
CTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATGGCGC
TGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAACGTAT
CAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGTTTGG
GTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCAGTTA
TATAAATGAGTTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCAATTA
TTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCATCGGA
GACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCGGAGA
AGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTGCCTC
CTCC
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