FC929989

Overview
NameFC929989
Unique NameFC929989
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15282 contig Ccv1_Contig15282:783..1486. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            +FGGVD   ++G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct:  227 IFGGVDNSLYQGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSQGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 300          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_MACFU (Gastricsin (Fragment) OS=Macaca fuscata fuscata GN=PGC PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            VFGGVD   + G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct:  215 VFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 288          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_HUMAN (Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            VFGGVD   + G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++ +  A G +
Sbjct:  226 VFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 299          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVS 234
            +FGG+D  ++ G   +VPV+ +GYWQ  L  I +  + T  C   C AIVD+GTSLLAGPT  ++ I   IG      GE +VS
Sbjct:  227 MFGGIDSSYYTGSLNWVPVSYEGYWQITLDSITMDGE-TIACADSCQAIVDTGTSLLAGPTSAISNIQSYIGASENSDGEMIVS 309          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGG 219
            V GG DP H+    T++PVT   YWQ ++  + +G     +C  GC+AI+D+GTSL+ GP+  +  +N AIGG
Sbjct:  229 VLGGSDPAHYVPPLTFIPVTIPAYWQVHMESVKVGT-GLSLCAQGCSAILDTGTSLITGPSEEIRALNKAIGG 300          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            +FGGVD   + G+  + PVT++ YWQ  + + LIG Q++G C  GC AIVD+GTSLL  P   ++    A G +
Sbjct:  226 IFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSAFLEATGAQ 299          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: RENI_RAT (Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 216
            V GG DP+H++G   YV ++K G WQ  +  + +G  +T +CE GC A+VD+GTS ++GPT  +  I  A+G
Sbjct:  238 VLGGSDPQHYQGNFHYVSISKAGSWQITMKGVSVG-PATLLCEEGCMAVVDTGTSYISGPTSSLQLIMQALG 308          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG------GEGVVS 234
            +FGG+D  +F G   +VP++ + YWQ  +  I +  Q    C G C AIVD+GTSLL+GPT  +  I   IG      GE VVS
Sbjct:  226 MFGGIDSSYFTGNLNWVPLSSETYWQITVDSITMNGQVIA-CSGSCQAIVDTGTSLLSGPTNAIASIQGYIGASQNANGEMVVS 308          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 VFGGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIGGE 222
            + GGVD + + G+  + PVT++ YWQ  + + LIGNQ+TG+C  GC  IVD+GT  L  P   +     A G +
Sbjct:  228 ILGGVDTQFYSGEIVWAPVTREMYWQVAIDEFLIGNQATGLCSQGCQGIVDTGTFPLTVPQQYLDSFVKATGAQ 301          
BLAST of FC929989 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    7 GGVDPKHFKGKHTYVPVTKKGYWQFNLGDILIGNQSTGVCEGGCAAIVDSGTSLLAGPTPVVTEINHAIG 216
            G +DP ++ G   +VPVT + YWQF +  + I   +   CEGGC AI+D+GTS L GP+  +  I  AIG
Sbjct:  227 GAIDPSYYTGSLHWVPVTLQKYWQFTVDSVTISG-AVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIG 295          
The following BLAST results are available for this feature:
BLAST of FC929989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PEPC_RHIFE7.703e-1243.24Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=... [more]
PEPC_MACFU7.703e-1244.59Gastricsin (Fragment) OS=Macaca fuscata fuscata GN... [more]
PEPC_HUMAN7.703e-1244.59Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1[more]
PEPA3_RABIT7.703e-1244.05Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
NAPSA_MOUSE1.006e-1142.47Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
PEPC_CALJA1.716e-1143.24Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1[more]
RENI_RAT2.927e-1143.06Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2[more]
PEPA_RHIFE3.823e-1142.86Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
PEPB_CANFA6.521e-1140.54Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
CHYM_SHEEP6.521e-1144.29Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34002F01EF PostHarvC1 Citrus clementina cDNA clone C34002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929989 ID=FC929989; Name=FC929989; organism=Citrus clementina; type=EST; length=704bp
GTTTTTGGTGGTGTTGATCCAAAGCACTTTAAAGGGAAGCATACCTATGT
TCCTGTTACTAAAAAAGGCTACTGGCAGTTCAATTTGGGAGATATATTAA
TTGGGAATCAGTCCACAGGTGTTTGTGAGGGTGGTTGTGCTGCCATTGTG
GACTCAGGAACATCCTTACTAGCCGGTCCAACACCTGTTGTGACTGAAAT
CAATCATGCCATTGGTGGTGAAGGAGTTGTTAGTGCGGAGTGTAAGCTAG
TTGTTTCCCAGTATGGGGATTTAATATGGGATCTCTTAGTATCAGGGCTA
CTACCTGAGAAAGTATGTCAGCAGATTGGTTTATGTGCTTTCAATGGCGC
TGAATATGTGAGTACTGGGATCAAGACCGTGGTTGAGAAGGAAAACGTAT
CAGCCGGGGATAGTGCTGTGTGCAGTGCTTGTGAAATGACCGTGGTTTGG
GTCCAGAATCAGCTAAAACAAAAGCAAACAAAGGAGAAAGTACTCAGTTA
TATAAATGAGTTCTGCGACAGCCTGCCAAATCCGATGGGAGAATCAATTA
TTGACTGTGGTCGCATTCCAACCATGCCAAATGTTTCATTCACCATCGGA
GACAAAATTTTCAACCTCTCTCCAGAGCAGTATATTCTGAAAACCGGAGA
AGGGATTGCAGAAGTCTGCATCAGTGGCTTCATGGCTTTCGACCTGCCTC
CTCC
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