FC929992

Overview
NameFC929992
Unique NameFC929992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_METTH (Acetylornithine aminotransferase OS=Methanobacterium thermoautotrophicum GN=argD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  344 ADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            ++++ +  ++F+  +   Y ++P+ +  GK   ++D  G  Y+D FAG+   S GH HP V  AI  Q++ L H++ IY      + A+ L +  P +   V+F NSG E+NE A+ +AR  TG   +IA
Sbjct:    3 SEEIIELERKFIMQT---YTRQPIVLSHGKGATVWDIEGNSYIDCFAGVAVNSIGHAHPKVALAICHQAQRLIHSSNIYYTREQVELAKLLTAISPHDR--VFFANSGAEANEGAIKLARKFTGKSEIIA 127          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: AGT2L_CAEEL (Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  341 SADQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHAT--TIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            S +++ ++RK  +G     +Y   P  +    MQYL+DE   ++LD  + +  V  GHCHP V+ AI   SK L  +T    ++   + D AE + S +PG L  V F NSG+E+N+LA+ +AR
Sbjct:   26 SKEEILKRRKDTIGSKCQIFYSDDPFMVSRASMQYLYDEKSNKFLDCISNVQHV--GHCHPKVVEAI---SKQLATSTCNVRFVSTQLTDCAEQILSTLPG-LDTVLFCNSGSEANDLALRLAR 143          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_PYRHO (Acetylornithine/acetyl-lysine aminotransferase OS=Pyrococcus horikoshii GN=argD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  401 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            Y+K L I++G+  Y++D+ GRRY+D  AGI     GH HP+ +  I EQ   L  A  ++ H    +  E L+  +  N + +Y  NSGTE+ E A+  ARL TG   +IA
Sbjct:    4 YRKRLKIIKGEGIYVWDDQGRRYVDLIAGIGVAILGHNHPEWVEGIREQLNKLVIAGPMFNHEEKEEMLEELSKFV--NFEYLYMGNSGTEAVEAALKFARLYTGRKEIIA 112          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BACHD (Acetylornithine aminotransferase OS=Bacillus halodurans GN=argD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            Y +  + I  GK   L+D  G  YLD  +GI   + GHCHP V+ A+ EQ     H + ++ H  I +   AL ++  G +  V+F NSG E+NE A+ +AR +TG
Sbjct:    8 YAKWDVTITSGKGTKLYDNQGNEYLDFVSGIAVCNLGHCHPKVVAAVEEQLHSFWHVSNLF-HIPIQENVAALLTEQSG-MDAVFFCNSGAEANEAAIKLARKATG 111          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BACAN (Acetylornithine aminotransferase OS=Bacillus anthracis GN=argD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.833e-12
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            Y ++ +  V+G    + D NG++YLD  +GI   + GHCHP V+ A+ EQ   + H + ++ +    + A  L   +   L  V+F NSG E+NE A+ +AR  TG
Sbjct:    9 YGRRTVEFVKGNGTKVIDNNGKQYLDFTSGIGVCNLGHCHPTVMKAVQEQLNDIWHISNLFTNSLQEEVASLLTENIA--LDYVFFCNSGAEANEAALKLARKHTG 112          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_PROMA (Acetylornithine aminotransferase OS=Prochlorococcus marinus GN=argD PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 39/102 (38.24%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + PL IV+G   +L+DE G++YLDA AGI T S GH    +   + +Q + +QH + +Y      D A+ L ++   +   V+F NSG E+NE A+ +AR
Sbjct:   29 YKRLPLKIVKGNGCWLWDETGKKYLDAVAGIATCSLGHSDKKLSKVLSQQLRKIQHVSNLYRIPEQEDLAQWLVNQSCAD--SVFFCNSGAEANEAAIKLAR 128          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BACSU (Acetylornithine aminotransferase OS=Bacillus subtilis GN=argD PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  386 SIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            S+F  Y +  ++I + K  Y+ D+NG+ YLD   GI   + GHCH  V  A+ +Q   + H + ++ +      A+ LA+   G+L  V+F NSG E+NE A+ +AR +TG   +I
Sbjct:    3 SLFQTYGRWDIDIKKAKGTYVEDQNGKTYLDFIQGIAVSNLGHCHEAVTEAVKKQLDSVWHVSNLFQNSLQEQAAQKLAAHSAGDL--VFFCNSGAEANEGAIKLARKATGKTKII 116          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BACAM (Acetylornithine aminotransferase (Fragment) OS=Bacillus amyloliquefaciens GN=argD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 41/116 (35.34%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  386 SIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMI 730
            S+F  Y +  ++I + K  Y+ D+NG+ YLD   GI   + GHCH  V  A+ +Q   + H + ++ +      A+ LA+   G+L  V+F NSG E+NE A+ +AR +TG   +I
Sbjct:    3 SLFQTYGRWDIDIKKAKGTYVEDQNGKTYLDFIQGIAVSNLGHCHEAVTEAVKKQLDSVWHVSNLFQNSLQEQAAQKLAAHSAGDL--VFFCNSGAEANEGAIKLARKATGKTKII 116          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_AERPE (Acetylornithine/acetyl-lysine aminotransferase OS=Aeropyrum pernix GN=argD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 37/112 (33.04%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            Y  + L IV+G MQY++D++GR+YLD  AG      GH +P ++ A+  Q++ L  A++ +   ++ +     +   P   + + F+N+GTE+ E A+  A L+TG  G++A
Sbjct:   11 YGYRGLRIVKGSMQYVWDDSGRKYLDCHAGHGAAFLGHSNPAIVEAVVRQARELVAASSSFSTPSLEEALTEFSRIAPPWAEEIVFLNTGTEAVEAALKAAWLATGKRGIVA 122          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD2_PSESM (Acetylornithine aminotransferase 2 OS=Pseudomonas syringae pv. tomato GN=argD2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMP--GNLKVVYFVNSGTESNELAMLMARL 706
            Y    L+   G    L+D++GR YLDA AG+   + GH HP +++AI +Q+ LL H + +Y      D+ + LA K+     +  V+F NSG E+NE A+ +ARL
Sbjct:   10 YQPLALSFTRGLGTRLWDQSGREYLDAVAGVAVTNVGHSHPMLVDAIRDQAGLLLHTSNLY----SIDWQQRLAQKLTRLAGMDRVFFNNSGAEANETALKLARL 110          
The following BLAST results are available for this feature:
BLAST of FC929992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ARGD_METTH3.346e-1333.08Acetylornithine aminotransferase OS=Methanobacteri... [more]
AGT2L_CAEEL7.454e-1336.29Alanine--glyoxylate aminotransferase 2-like OS=Cae... [more]
ARGD_PYRHO9.735e-1338.74Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD_BACHD9.735e-1337.74Acetylornithine aminotransferase OS=Bacillus halod... [more]
ARGD_BACAN2.833e-1234.91Acetylornithine aminotransferase OS=Bacillus anthr... [more]
ARGD_PROMA3.699e-1238.24Acetylornithine aminotransferase OS=Prochlorococcu... [more]
ARGD_BACSU3.699e-1235.34Acetylornithine aminotransferase OS=Bacillus subti... [more]
ARGD_BACAM3.699e-1235.34Acetylornithine aminotransferase (Fragment) OS=Bac... [more]
ARGD_AERPE3.699e-1233.04Acetylornithine/acetyl-lysine aminotransferase OS=... [more]
ARGD2_PSESM3.699e-1238.10Acetylornithine aminotransferase 2 OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionC34002F04EF PostHarvC1 Citrus clementina cDNA clone C34002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929992 ID=FC929992; Name=FC929992; organism=Citrus clementina; type=EST; length=735bp
GAAACTCACTTAACTTTGAAGTCAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCACTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAATCTGTTTTCTTTCT
TTATCTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATCT
TGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTCT
TTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGCT
GCCGCCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGATC
AAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTAT
TATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTGA
TGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTGT
CCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAGC
AAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTGA
TTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTAT
ATTTTGTCAATTCTGGGACCGAAAGCAATGAGTTAGCAATGCTAATGGCC
AGACTTTCCACAGGTAATCTTGGCATGATTGCCCT
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