FC929992

Overview
NameFC929992
Unique NameFC929992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_LISMF (Acetylornithine aminotransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=argD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            Y + P+++V G    + D+NG+ YLD  +GI   + GHC  +V  A+ +Q   + H + +Y        AE +A    G  ++V+F NSGTE+NE A+ +AR  TG
Sbjct:    8 YKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLGHCPANVAEAVQQQLTNIWHTSNLYECALQDSVAELIAD---GKDRLVFFCNSGTEANEAALKLARKYTG 110          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_PYRKO (Acetylornithine aminotransferase OS=Pyrococcus kodakaraensis GN=argD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  401 YQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTGNLGMIA 733
            Y+K L +V G+  Y++DE GRRYLD  AGI     GH HP+ +  +  Q + +  A  ++ H    +  E L+  +  + + VY  NSGTE+ E A+  ARL+TG   ++A
Sbjct:    4 YRKRLRLVRGEGVYVWDEKGRRYLDLIAGIGVNVLGHAHPEWVLDMSRQLEKIVVAGPMFEHDEREEMLEELSHWV--DYEYVYMGNSGTEAVEAAIKFARLATGRSEIVA 112          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_AQUAE (Acetylornithine aminotransferase OS=Aquifex aeolicus GN=argD PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 2
Query:  395 HYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            +Y + P+  V GK  YL+DE G+ YLD  +GI   S GH +P +  A+ EQ + L H + +Y +    + A  L        K V+F NSGTES E A+ +AR
Sbjct:    7 NYARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGK-VFFANSGTESVEAAIKLAR 108          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_THEEB (Acetylornithine aminotransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + P+ +V G+   ++D+ GR YLD  AGI T + GH HP ++  +  Q + L H + +Y        A+ L +   G+   V+F NSG E+NE A+ +AR
Sbjct:   22 YGRFPITLVRGEGCRVWDDQGRSYLDFVAGIATCTLGHAHPALVETVSRQMQTLHHVSNLYYIPQQGALAQWLVAHSCGDR--VFFCNSGAEANEAAIKLAR 121          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAP (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=argD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  422 VEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            V+GK   L+D+ G+ Y+D   GI   S GHCHP +   + +QSK L H + I+ +      A+ L S    +   V+F NSG E+NE A  +AR
Sbjct:   29 VKGKGSRLWDQKGKEYIDFSGGIAVTSLGHCHPVLNKVLRQQSKKLWHISNIFTNEPALRLADKLISSSFASR--VFFANSGAEANEAAFKLAR 120          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BUCAI (Acetylornithine/succinyldiaminopimelate aminotransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=argD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y   P   ++GK   ++D+ G+ Y+D   GI   S GHCHP +   +  QSK+L H + I+ +      A+ L S    +   ++F NSG E+NE A  +AR
Sbjct:   21 YNPIPFIPIKGKGSRIWDQKGKEYIDFSGGIAVTSLGHCHPILNKTLKNQSKMLWHLSNIFTNEPALRLAKKLLSSSFASR--IFFANSGAEANEAAFKLAR 120          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_BACCR (Acetylornithine aminotransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=argD PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMARLSTG 715
            Y ++ +  V+G    + D  G+ YLD  +GI   + GHCHP VL  + EQ   + H + ++ +    + A  L       L  V+F NSG E+NE A+ +AR  TG
Sbjct:    9 YGRRTIEFVKGTGTKVIDNKGKEYLDFTSGIGVCNLGHCHPTVLKGVQEQLDDIWHISNLFTNSLQEEVASLLTENRA--LDYVFFCNSGAEANEAALKLARKHTG 112          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD1_BORPA (Acetylornithine aminotransferase 1 OS=Bordetella parapertussis GN=argD1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + P++   G+  +L+D   RRYLDA AGI     GH HP ++ AI EQ+  L H + IY     A  A  LA      +  V F NSG+E+NE A+ +AR
Sbjct:    9 YARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARRLAEL--SGMSEVLFSNSGSEANEAAIKLAR 108          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD1_BORBR (Acetylornithine aminotransferase 1 OS=Bordetella bronchiseptica GN=argD1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 41/102 (40.20%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  398 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            Y + P++   G+  +L+D   RRYLDA AGI     GH HP ++ AI EQ+  L H + IY     A  A  LA      +  V F NSG+E+NE A+ +AR
Sbjct:    9 YARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARRLAEL--SGMSEVLFSNSGSEANEAAIKLAR 108          
BLAST of FC929992 vs. ExPASy Swiss-Prot
Match: ARGD_GLOVI (Acetylornithine aminotransferase OS=Gloeobacter violaceus GN=argD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  389 IFHYYQKPLNIVE-GKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTESNELAMLMAR 703
            + H Y +   + E G+  YL D  GRRYLD  AGI T   GH HP +  A+ EQ++ L H + +Y     A  AE L +    +   V+F NSG E+NE A+ +AR
Sbjct:   11 VMHTYARFSVVFERGEGCYLEDSEGRRYLDFVAGIATCVLGHAHPVLSAAVAEQARTLIHVSNLYYTPQQACLAEWLTAHSAAD--QVFFCNSGAEANEGAIKLAR 114          
The following BLAST results are available for this feature:
BLAST of FC929992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ARGD_LISMF1.836e-1135.85Acetylornithine aminotransferase OS=Listeria monoc... [more]
ARGD_PYRKO2.398e-1136.94Acetylornithine aminotransferase OS=Pyrococcus kod... [more]
ARGD_AQUAE2.398e-1138.83Acetylornithine aminotransferase OS=Aquifex aeolic... [more]
ARGD_THEEB5.342e-1135.29Acetylornithine aminotransferase OS=Thermosynechoc... [more]
ARGD_BUCAP5.342e-1138.30Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_BUCAI6.977e-1134.31Acetylornithine/succinyldiaminopimelate aminotrans... [more]
ARGD_BACCR6.977e-1133.96Acetylornithine aminotransferase OS=Bacillus cereu... [more]
ARGD1_BORPA6.977e-1140.20Acetylornithine aminotransferase 1 OS=Bordetella p... [more]
ARGD1_BORBR6.977e-1140.20Acetylornithine aminotransferase 1 OS=Bordetella b... [more]
ARGD_GLOVI9.112e-1139.62Acetylornithine aminotransferase OS=Gloeobacter vi... [more]

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Properties
Property NameValue
Genbank descriptionC34002F04EF PostHarvC1 Citrus clementina cDNA clone C34002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929992 ID=FC929992; Name=FC929992; organism=Citrus clementina; type=EST; length=735bp
GAAACTCACTTAACTTTGAAGTCAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCACTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAATCTGTTTTCTTTCT
TTATCTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATCT
TGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTCT
TTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGCT
GCCGCCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGATC
AAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTAT
TATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTGA
TGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTGT
CCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAGC
AAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTGA
TTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTAT
ATTTTGTCAATTCTGGGACCGAAAGCAATGAGTTAGCAATGCTAATGGCC
AGACTTTCCACAGGTAATCTTGGCATGATTGCCCT
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