FC930000

Overview
NameFC930000
Unique NameFC930000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930000 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.713e-59
Identity = 105/175 (60.00%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:  154 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGNGFLLLDSE-FNVKGRWE 675
            C   GPGY TPLDAM GPRE+++Y+ C+Y  T  +KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIY+VD   +PRAP LHK VEP D+  K GL+ PHT+HCL SG I++S +GD  GN +G GF+LLD E F V G WE
Sbjct:    5 CSGCGPGYKTPLDAMKGPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDLFWKCGLANPHTSHCLGSGQIMISTMGDPSGNGKG-GFVLLDGETFEVIGNWE 178
The following BLAST results are available for this feature:
BLAST of FC930000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_DANRE1.713e-5960.00Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]

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Properties
Property NameValue
Genbank descriptionC34002F12EF PostHarvC1 Citrus clementina cDNA clone C34002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930000 ID=FC930000; Name=FC930000; organism=Citrus clementina; type=EST; length=712bp
GATCAGCGTGTGATTGCGTTCTTATCATCCATTCGCTTCCTATCTTGATC
TTTCTTCAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTCTTGTAAGAAA
TGGCAACTGATACTGCGGTGGCTGAACACCGGTCGAGCAATAATGGCCAT
GGTTGCTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGTC
TGGTCCTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTG
GAAGAGAGAAGCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCT
TCTTCTTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGCGA
TGAACTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATT
CATCTGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCGT
ATATACATAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATAA
AGTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCTC
ACACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGGA
GATAAGGATGGAAATGCTGAGGGAAATGGATTTCTTCTCCTTGACTCAGA
ATTCAATGTGAAAGGAAGATGGGAAAACCAGGTCACAGTCCTGCTTTCGG
TTATGATTTCTG
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