FC930001

Overview
NameFC930001
Unique NameFC930001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15191 contig Ccv1_Contig15191:2..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.713e-67
Identity = 113/170 (66.47%), Postives = 135/170 (79.41%), Query Frame = 1
Query:  115 AFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK 624
            AFGWAA D SGVLSPFHFSRR  GE DVT K+  CG+CHSDLH IKN WG + YPI+PGHEIVG+ T+VG  V+KFK GD+VGVG ++GSC+SC+SC  DLENYCPKV+ TY S+  DGT   GGYSD +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K
Sbjct:    7 AFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK 176          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.544e-67
Identity = 116/161 (72.05%), Postives = 134/161 (83.23%), Query Frame = 1
Query:  148 VLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 630
            +LSPF FSRRATG+ DV FKV +CG+CHSDLH++KNEWG   YPIVPGHEIVG VTEVGSKV KFKVGD VGVGC+VGSC SC++C  D EN C K + TYA    DG+ITYGGY+D+MVAD+HFV+R PE  PLD+ APLLCAGIT YSPLR++GLDKPG
Sbjct:    1 ILSPFKFSRRATGDNDVRFKVLYCGVCHSDLHMVKNEWGMTTYPIVPGHEIVGRVTEVGSKVEKFKVGDAVGVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPG 161          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.628e-67
Identity = 113/178 (63.48%), Postives = 141/178 (79.21%), Query Frame = 1
Query:   97 QEHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 630
            +EH K A GWAARD SGVLSP++FSRRA  + DVT KV +CGICH+DLH++KN+WGNA+YP+VPGHEIVGVVT VG+ V+KFK GD VGVG  VGSCR+CDSC    ENYCP +++T   K + G  T GG+SD +V +EH+V+R+P G PLD  APLLCAG+TVYSP+  +GL+ PG
Sbjct:   77 EEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPG 254          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.117e-66
Identity = 113/171 (66.08%), Postives = 135/171 (78.95%), Query Frame = 1
Query:  115 AFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTI-TYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK 624
            AFGWAA D SGVLSPFHFSRR  GE DVT K+  CG+CHSDLH IKN WG + YPI+PGHEIVG+ T+VG  V+KFK GD+VGVG ++GSC+SC+SC  DLENYCPKV+ TY S+  DGT    GGYSD +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K
Sbjct:    7 AFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTK 177          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 7.389e-65
Identity = 117/174 (67.24%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  106 PKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP 627
            P  A G AARD SG LSP   SRR+TG+ DV  K+ +CGICHSDLH IKNEW NA YP+VPGHEI GVVTE G  V+KFK GDKVGVGCMV SC SCDSC   LEN+CP VI TY S   DGT+TYGGYS  +V  E FVVR PE  PLD  APLLCAGITVYSP++++GL+ P
Sbjct:    3 PTAAAGLAARDASGHLSPLTISRRSTGDDDVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVP 176          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.790e-64
Identity = 111/181 (61.33%), Postives = 138/181 (76.24%), Query Frame = 1
Query:   97 QEHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHD---GTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 630
            +EH K A GWAARD SGVLSP++FSRRA  + DVT KV +CGICH+DLH++KN+WGNA+YP+VPGHEIVGVVT VG+ V+KFK GD VGVG  V SCR C+ C    ENYC K++ T     HD   G  T GG+SD +V +EH+V+R+P G PLD+ APLLCAG+TVYSP+  +GL+ PG
Sbjct:   77 EEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPG 257          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.255e-64
Identity = 111/174 (63.79%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  109 KNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 630
            + A G AARD+SG LSPF  SRR+TG+ DV  K+  CGICHSDLH IKNEW ++IYP+VPGHEI GVVTEVG  V++FK GD+VGVGCMV SCRSC+SC    EN+CP+ + TY S   DGT+TYGGYS  +V  E FVV  PE  PLD  APLLCAGITVY+P++++GL+ PG
Sbjct:   14 QQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPG 187          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.541e-62
Identity = 106/172 (61.63%), Postives = 133/172 (77.33%), Query Frame = 1
Query:  115 AFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 630
            AFGWAA+D SG LSPFHF+RR     DVT K+ +CG+CHSDLH +KN+WG   YP+VPGHEI G+VT+VGS V+KFK GD+VGVG +V SC+ C+ C  DLE+YCPK + TY S Y  GT T GGYSD +V  + FV++ P+  PLDA APLLCAGITVYSP+++YG+ +PG
Sbjct:    6 AFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPY-KGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPG 176          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.304e-61
Identity = 109/172 (63.37%), Postives = 129/172 (75.00%), Query Frame = 1
Query:  115 AFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCPKVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG 630
            A GWAARDTSG LSPF F+RR   E DVT KV +CGICH+DLH+IKNEWGNA+YP+VPGHEIVGVVT VG+ V+KFK GD VGVG  V SCR+CDSC    ENYCP +++T     + G  T GG+SD MV  + +VVR+P   P D  APLLCAG+TVYSP+  YGL+ PG
Sbjct:    8 ALGWAARDTSGHLSPFSFTRRVQQEDDVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPG 179          
BLAST of FC930001 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.720e-59
Identity = 111/191 (58.12%), Postives = 132/191 (69.11%), Query Frame = 1
Query:   85 QAPEQEHPKNAFGWAARDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHLIKNEWGNAIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCRSCDSCAIDLENYCP-KVIMTYASKYHDGTITYGGYSDTMVADEHFVVRIPEGA--------PLDATAPLLCAGITVYSPLRFYGLDKPG 630
            QAP  +H + A G AA D SG L+P   SRR TG+ DV  KV +CGICHSDLH IKNEW NA+YP+V GHEI GVVTEVG  V++FK GD+VGVGCMV +C  C+SC    ENYC   V+ TY S   DGT TYGGYSD +V  + FVVR P  A        PLD+ APLLCAG+TVY+P+R +GL + G
Sbjct:   13 QAPPPQHTRKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAG 203          
The following BLAST results are available for this feature:
BLAST of FC930001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
CADH3_ARATH2.713e-6766.47Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
MTDH_PETCR3.544e-6772.05Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CAD8B_ORYSJ4.628e-6763.48Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH2_ARATH5.117e-6666.08Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH5_ORYSJ7.389e-6567.24Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CAD8C_ORYSJ4.790e-6461.33Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CADH3_ORYSJ6.255e-6463.79Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH1_STYHU1.541e-6261.63Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CAD8D_ORYSJ1.304e-6163.37Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH7_ORYSJ2.720e-5958.12Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34002G01EF PostHarvC1 Citrus clementina cDNA clone C34002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930001 ID=FC930001; Name=FC930001; organism=Citrus clementina; type=EST; length=683bp
GATTGCACCTTGTTTATTCAAATACCCTGGACGTCAAACTAAGCCAACAA
GCACCAATATCATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCAAG
AGCACCCTAAGAACGCCTTTGGATGGGCTGCCAGGGACACTTCTGGCGTT
CTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTGAC
ATTCAAAGTAACTCACTGTGGGATATGCCATTCAGATCTTCACTTGATCA
AAAATGAATGGGGCAATGCCATTTACCCAATCGTCCCCGGACATGAGATT
GTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTCGG
AGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCGCTCTTGTGATA
GCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCTAT
GCCAGCAAGTACCATGATGGAACTATCACATACGGAGGCTACTCTGACAC
TATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCGCACCAC
TTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTCCG
TTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTCGG
CTTGGGCGGTCTAGGCCATGTCGCTGTCAAATC
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