FC930002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74 Identity = 136/199 (68.34%), Postives = 162/199 (81.41%), Query Frame = 2 Query: 101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697 P G + K+ FCIHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++LGTGKK + L S Sbjct: 250 PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS 448
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2) HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74 Identity = 136/199 (68.34%), Postives = 162/199 (81.41%), Query Frame = 2 Query: 101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697 P G + K+ FCIHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++LGTGKK + L S Sbjct: 250 PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS 448
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74 Identity = 136/199 (68.34%), Postives = 162/199 (81.41%), Query Frame = 2 Query: 101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697 P G + K+ FCIHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++LGTGKK + L S Sbjct: 250 PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS 448
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1) HSP 1 Score: 278.485 bits (711), Expect = 2.473e-74 Identity = 137/216 (63.43%), Postives = 169/216 (78.24%), Query Frame = 2 Query: 53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPWRSSLNS 697 TG+L L K G + K+ FCIHNI+YQGRF+F+DF LNLP +FKSSFDFIDGY+KPV GRKINWMKAGIL++D VLTVSP+YA+EL+SGE +G ELDNI+R TGI GIVNGMDV EW+P+ DK++ V YD +T ++ K L KEALQAEVGLPVDR +P++ FIGRLEEQKG D++ AAIP +K E+VQI++LGTGKK + L S Sbjct: 242 TGLLACYL---KSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWMKAGILQADKVLTVSPYYAEELISGEARGCELDNIMRLTGITGIVNGMDVSEWDPIKDKFLTVNYDVTTALEGKALNKEALQAEVGLPVDRKVPLVAFIGRLEEQKGPDVMIAAIPEIVKEEDVQIVLLGTGKKKFERLLKS 454
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 8.231e-70 Identity = 139/214 (64.95%), Postives = 158/214 (73.83%), Query Frame = 2 Query: 53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK-GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691 T +LP L K G + K+ FCIHNIAYQGRF DF LLNLP F SFDF+DG+ KPV GRKINWMKAGI E D+VLTVSPHY +EL SG +KGVELD ++R ++ GIVNGMDV +WNP TDKYI VKY+A+TV A+ L KE LQAEVGL VD +IPVI FIGRLEEQKGSDIL AA P F++ENVQIIVLGTGKK L Sbjct: 192 TAVLPCYL---KSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRTKPLETGIVNGMDVIDWNPATDKYISVKYNATTVAQARALNKEILQAEVGLSVDSSIPVIVFIGRLEEQKGSDILIAASPEFVEENVQIIVLGTGKKKMEEEL 402 HSP 2 Score: 80.4925 bits (197), Expect = 9.883e-15 Identity = 32/44 (72.73%), Postives = 41/44 (93.18%), Query Frame = 1 Query: 4 QYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135 +YFSGPYGE+VVFVANDWHT+++PCYLK+MYK G+Y++AKV F Sbjct: 173 EYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAF 216
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 3.103e-35 Identity = 68/195 (34.87%), Postives = 115/195 (58.97%), Query Frame = 2 Query: 101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667 P G + + IHN+A+QG + L LP ++ + +++ + +G +N++K ++ +D ++TVS Y+ E+ + E G L+ ++ RK+ + GIVNG+D+ +WNP TDK + Y + K K LQ E+GLPV ++P+IGFIGRL+ QKG D++ AIP ++E+VQ ++LG+G Sbjct: 300 PYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEG-GQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDD-LSGKAKCKAELQKELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPELMREDVQFVMLGSG 492 HSP 2 Score: 46.2098 bits (108), Expect = 3.103e-35 Identity = 16/35 (45.71%), Postives = 25/35 (71.43%), Query Frame = 1 Query: 22 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAK 126 YG++ +FV NDWH SL+P L Y+P G+Y+ ++ Sbjct: 274 YGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSR 308
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3) HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33 Identity = 85/222 (38.29%), Postives = 124/222 (55.86%), Query Frame = 2 Query: 53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700 T +LP+ L K G + IHNIA+QGR EDF ++LP + F D PV G N AG+ +D V+TVS Y+ EL + + G L II + ++GIVNG+D +EWNP D ++ + Y T+ KP K ALQ E+GLPV ++P+IGFIGRL+ QKG D++A A+P + ++VQ+++LGTG++ L + Sbjct: 417 TALLPVYL---KAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYD----PVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSQG-GWGLHQIINENDWKLQGIVNGIDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRRDLEQMLRQF 630
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.782e-33 Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 2 Query: 140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679 IHN+ YQG F + LP + + D I+ Y K IN++K GIL SD++ TVSP YA E+ + E G +LD ++R + G++NG+D E+NP TDK I V Y + D K K LQ E+GLP DR IP+IG I RL +QKG DIL+ + + + ++Q ++LGTG + + Sbjct: 164 IHNLGYQGIFDSKYMEFSGLP-NYLYNIDGIEFYGK------INFLKGGILYSDIINTVSPTYANEIQTKE-YGEKLDGVLRLRSADLYGVLNGIDYDEYNPETDKRIFVNYSLDNI-DKKYENKVRLQKELGLPEDRRIPMIGMITRLVDQKGLDILSEVLRYIVNYDIQFVILGTGDEKY 336 HSP 2 Score: 38.5058 bits (88), Expect = 2.782e-33 Identity = 22/36 (61.11%), Postives = 24/36 (66.67%), Query Frame = 1 Query: 31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFL 138 DV+ V NDW TSLIP YLKT+YK Y AK V L Sbjct: 129 DVLHV-NDWQTSLIPVYLKTLYKEDEFY--AKTVTL 161
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32 Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 2 Query: 53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670 T +LP+ L K G + IHNIA+QGR EDF ++L + F D PV G N AG+ +D ++TVS YA EL + E G L NII ++ K GIVNG+D ++WNP D Y+ Y+ T+ K K ALQ E+GLPV ++P+I FIGRL+ QKG D++A AIP + +VQ+++LGTG+ Sbjct: 402 TALLPVYL---KAYYRDHGLMNYTRSVLVIHNIAHQGRGPVEDFNTVDLSGNYLDLFKMYD----PVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSEG-GWGLHNIINESDWKFRGIVNGVDTKDWNPQFDAYLTSDGYTNYNLKTLQTGKRQCKAALQRELGLPVREDVPIISFIGRLDHQKGVDLIAEAIPWMMSHDVQLVMLGTGR 605
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31 Identity = 88/219 (40.18%), Postives = 119/219 (54.34%), Query Frame = 2 Query: 53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691 T +LP+ L K G + IHNIA+QGR +DF L+LP + F D P G +N AGI +D +LTVS YA EL + E G L II ++ K GIVNG+D +WNP D ++ Y TV K K ALQ E+GLPV ++PVI FIGRL+ QKG D++A A+P ++VQ+I+LGTG++ +L Sbjct: 399 TALLPVYL---KAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYD----PFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEG-GWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTL 609 The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 352
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bpback to top |