FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSJ (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=WAXY PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74
Identity = 136/199 (68.34%), Postives = 162/199 (81.41%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            P G  +  K+ FCIHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK +   L S
Sbjct:  250 PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS 448          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=WAXY PE=3 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74
Identity = 136/199 (68.34%), Postives = 162/199 (81.41%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            P G  +  K+ FCIHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK +   L S
Sbjct:  250 PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS 448          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.450e-74
Identity = 136/199 (68.34%), Postives = 162/199 (81.41%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            P G  +  K+ FCIHNI+YQGRFAFED+  LNL  +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVSP+YA+EL+SG  +G ELDNI+R TGI GIVNGMDV EW+P  DKYI  KYDA+T ++AK L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP  ++E+VQI++LGTGKK +   L S
Sbjct:  250 PNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKS 448          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.473e-74
Identity = 137/216 (63.43%), Postives = 169/216 (78.24%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPWRSSLNS 697
            TG+L   L   K      G  +  K+ FCIHNI+YQGRF+F+DF  LNLP +FKSSFDFIDGY+KPV GRKINWMKAGIL++D VLTVSP+YA+EL+SGE +G ELDNI+R TGI GIVNGMDV EW+P+ DK++ V YD +T ++ K L KEALQAEVGLPVDR +P++ FIGRLEEQKG D++ AAIP  +K E+VQI++LGTGKK +   L S
Sbjct:  242 TGLLACYL---KSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWMKAGILQADKVLTVSPYYAEELISGEARGCELDNIMRLTGITGIVNGMDVSEWDPIKDKFLTVNYDVTTALEGKALNKEALQAEVGLPVDRKVPLVAFIGRLEEQKGPDVMIAAIPEIVKEEDVQIVLLGTGKKKFERLLKS 454          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.231e-70
Identity = 139/214 (64.95%), Postives = 158/214 (73.83%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK-GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            T +LP  L   K      G  +  K+ FCIHNIAYQGRF   DF LLNLP  F  SFDF+DG+ KPV GRKINWMKAGI E D+VLTVSPHY +EL SG +KGVELD ++R   ++ GIVNGMDV +WNP TDKYI VKY+A+TV  A+ L KE LQAEVGL VD +IPVI FIGRLEEQKGSDIL AA P F++ENVQIIVLGTGKK     L
Sbjct:  192 TAVLPCYL---KSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKELTSGPEKGVELDGVLRTKPLETGIVNGMDVIDWNPATDKYISVKYNATTVAQARALNKEILQAEVGLSVDSSIPVIVFIGRLEEQKGSDILIAASPEFVEENVQIIVLGTGKKKMEEEL 402          

HSP 2 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 32/44 (72.73%), Postives = 41/44 (93.18%), Query Frame = 1
Query:    4 QYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            +YFSGPYGE+VVFVANDWHT+++PCYLK+MYK  G+Y++AKV F
Sbjct:  173 EYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAF 216          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.103e-35
Identity = 68/195 (34.87%), Postives = 115/195 (58.97%), Query Frame = 2
Query:  101 PKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFI----DGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            P G  +  +    IHN+A+QG      +  L LP ++  + +++       +   +G  +N++K  ++ +D ++TVS  Y+ E+ + E  G  L+ ++  RK+ + GIVNG+D+ +WNP TDK +   Y     +  K   K  LQ E+GLPV  ++P+IGFIGRL+ QKG D++  AIP  ++E+VQ ++LG+G
Sbjct:  300 PYGVYRDSRSTLVIHNLAHQGVEPASTYPDLGLPPEWYGALEWVFPEWARRHALDKGEAVNFLKGAVVTADRIVTVSQGYSWEVTTAEG-GQGLNELLSSRKSVLNGIVNGIDINDWNPTTDKCLPHHYSVDD-LSGKAKCKAELQKELGLPVREDVPLIGFIGRLDYQKGIDLIKMAIPELMREDVQFVMLGSG 492          

HSP 2 Score: 46.2098 bits (108), Expect = 3.103e-35
Identity = 16/35 (45.71%), Postives = 25/35 (71.43%), Query Frame = 1
Query:   22 YGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAK 126
            YG++ +FV NDWH SL+P  L   Y+P G+Y+ ++
Sbjct:  274 YGQNCMFVVNDWHASLVPVLLAAKYRPYGVYRDSR 308          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 85/222 (38.29%), Postives = 124/222 (55.86%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            T +LP+ L   K      G     +    IHNIA+QGR   EDF  ++LP  +   F   D    PV G   N   AG+  +D V+TVS  Y+ EL + +  G  L  II +    ++GIVNG+D +EWNP  D ++     + Y   T+   KP  K ALQ E+GLPV  ++P+IGFIGRL+ QKG D++A A+P  + ++VQ+++LGTG++     L  +
Sbjct:  417 TALLPVYL---KAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLPPHYMDPFKLYD----PVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSQG-GWGLHQIINENDWKLQGIVNGIDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRRDLEQMLRQF 630          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.782e-33
Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            IHN+ YQG F  +      LP  +  + D I+ Y K      IN++K GIL SD++ TVSP YA E+ + E  G +LD ++R     + G++NG+D  E+NP TDK I V Y    + D K   K  LQ E+GLP DR IP+IG I RL +QKG DIL+  + + +  ++Q ++LGTG + +
Sbjct:  164 IHNLGYQGIFDSKYMEFSGLP-NYLYNIDGIEFYGK------INFLKGGILYSDIINTVSPTYANEIQTKE-YGEKLDGVLRLRSADLYGVLNGIDYDEYNPETDKRIFVNYSLDNI-DKKYENKVRLQKELGLPEDRRIPMIGMITRLVDQKGLDILSEVLRYIVNYDIQFVILGTGDEKY 336          

HSP 2 Score: 38.5058 bits (88), Expect = 2.782e-33
Identity = 22/36 (61.11%), Postives = 24/36 (66.67%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFL 138
            DV+ V NDW TSLIP YLKT+YK    Y  AK V L
Sbjct:  129 DVLHV-NDWQTSLIPVYLKTLYKEDEFY--AKTVTL 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 85/212 (40.09%), Postives = 118/212 (55.66%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            T +LP+ L   K      G     +    IHNIA+QGR   EDF  ++L   +   F   D    PV G   N   AG+  +D ++TVS  YA EL + E  G  L NII ++  K  GIVNG+D ++WNP  D Y+       Y+  T+   K   K ALQ E+GLPV  ++P+I FIGRL+ QKG D++A AIP  +  +VQ+++LGTG+
Sbjct:  402 TALLPVYL---KAYYRDHGLMNYTRSVLVIHNIAHQGRGPVEDFNTVDLSGNYLDLFKMYD----PVGGEHFNIFAAGLKTADRIVTVSHGYAWELKTSEG-GWGLHNIINESDWKFRGIVNGVDTKDWNPQFDAYLTSDGYTNYNLKTLQTGKRQCKAALQRELGLPVREDVPIISFIGRLDHQKGVDLIAEAIPWMMSHDVQLVMLGTGR 605          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 88/219 (40.18%), Postives = 119/219 (54.34%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSL 691
            T +LP+ L   K      G     +    IHNIA+QGR   +DF  L+LP  +   F   D    P  G  +N   AGI  +D +LTVS  YA EL + E  G  L  II ++  K  GIVNG+D  +WNP  D ++       Y   TV   K   K ALQ E+GLPV  ++PVI FIGRL+ QKG D++A A+P    ++VQ+I+LGTG++    +L
Sbjct:  399 TALLPVYL---KAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYLDLPVDYMDLFKLYD----PFGGDHLNIFAAGIKAADRLLTVSHGYAWELKTAEG-GWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTL 609          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
SSG1_ORYSJ1.450e-7468.34Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSI1.450e-7468.34Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYGL1.450e-7468.34Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT2.473e-7463.43Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU8.231e-7064.95Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSY1_WHEAT3.103e-3534.87Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
SSY2_SOLTU1.241e-3338.29Granule-bound starch synthase 2, chloroplastic/amy... [more]
GLGA_THEM42.782e-3341.21Glycogen synthase OS=Thermosipho melanesiensis (st... [more]
SSG2_PEA1.373e-3240.09Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY21_ORYSJ1.518e-3140.18Soluble starch synthase 2-1, chloroplastic/amylopl... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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