FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_LACCB (Glycogen synthase OS=Lactobacillus casei (strain BL23) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.727e-25
Identity = 73/192 (38.02%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDF-IDGYNKPVRGR--KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHF-IKENVQIIVLGTGKKPWRSSLNS 697
            IHN+ +QG F          P+   + F    +G+N    G+   INW+K GI  +D+V TVSP YA+E +     G  LD  +RK   K  GI+NG+D + +NP TD+ +   YDA   +  K   K+ALQ E+ LP  R  P+   + RL  QKG+D+L  A+ +F ++ NVQ++VLGTG +     L+S
Sbjct:  164 IHNLQFQGWFP---------PSTLATVFGIGREGFNDDGFGQDGSINWLKGGINYADLVSTVSPSYAKE-IQTPAFGEHLDGTLRKQSGKLVGILNGIDSEVYNPATDQNLAYNYDAKN-LAGKAKDKKALQDEMHLP-KRTDPLFAMVSRLTRQKGADLLVDALENFLVQNNVQVVVLGTGDQDLEEDLSS 343          

HSP 2 Score: 29.6462 bits (65), Expect = 1.727e-25
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMY 96
            V  ANDWHT+ IP  LK  Y
Sbjct:  130 VIHANDWHTAFIPVLLKEKY 149          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_LACC3 (Glycogen synthase OS=Lactobacillus casei (strain ATCC 334) GN=glgA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.727e-25
Identity = 73/192 (38.02%), Postives = 107/192 (55.73%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDF-IDGYNKPVRGR--KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHF-IKENVQIIVLGTGKKPWRSSLNS 697
            IHN+ +QG F          P+   + F    +G+N    G+   INW+K GI  +D+V TVSP YA+E +     G  LD  +RK   K  GI+NG+D + +NP TD+ +   YDA   +  K   K+ALQ E+ LP  R  P+   + RL  QKG+D+L  A+ +F ++ NVQ++VLGTG +     L+S
Sbjct:  164 IHNLQFQGWFP---------PSTLATVFGIGREGFNDDGFGQDGSINWLKGGINYADLVSTVSPSYAKE-IQTPAFGEHLDGTLRKQSGKLVGILNGIDSEVYNPATDQNLAYNYDAKN-LAGKAKDKKALQDEMHLP-KRTDPLFAMVSRLTRQKGADLLVDALENFLVQNNVQVVVLGTGDQDLEEDLSS 343          

HSP 2 Score: 29.6462 bits (65), Expect = 1.727e-25
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMY 96
            V  ANDWHT+ IP  LK  Y
Sbjct:  130 VIHANDWHTAFIPVLLKEKY 149          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_DESVM (Glycogen synthase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=glgA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.247e-25
Identity = 75/183 (40.98%), Postives = 101/183 (55.19%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNI--IRKTGIKGIVNGMDVQEWNPLTDKYIGVKY--DASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            IHN+A+QGRFA   F    LP Q    S  +F   +N          +KAGI  +DMV TVSP YA+E++ G   G  L+ I  +R+  + GI+NG D   WNP  DK++  +Y  D       K   K AL  E+GL P   + PV+GFIGRL  QKG D+L   +P  ++ NV +I+LG G
Sbjct:  169 IHNLAFQGRFASRLFTGCGLPPQAWTMSGVEFWGDFNL---------LKAGIAYADMVTTVSPSYAREIL-GPAYGCGLEGILQVRQHALHGILNGADYGIWNPAQDKFLPCRYGPDDPQGFAGKQRCKAALLDELGLAPELAHRPVLGFIGRLRGQKGIDLLLDIVPRLMERNVGVIILGEG 341          

HSP 2 Score: 25.409 bits (54), Expect = 2.247e-25
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V  ANDW + L+P YL
Sbjct:  135 VLHANDWQSGLVPAYL 150          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_LACS1 (Glycogen synthase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.248e-25
Identity = 74/185 (40.00%), Postives = 105/185 (56.76%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFG-LLNLPAQFKSSFDFIDGYNKPVR-GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K    IHN+ +QG +  E  G L NL A +     + DG    VR    +N+MK GIL +D V TVSP YA E+ + E  G  LD I+R     ++GI+NG+D +  NP TDK +   Y A   +  K   K ALQ E GLP  +++PVI  + RL  QKG  ++ + + + ++ +VQ+IVLGTG
Sbjct:  158 KTVLTIHNLQFQGEYGREVLGELFNLDASY-----YDDG---TVRFDTAVNFMKTGILYADKVNTVSPTYASEIQT-EAFGQGLDEILRMHNWKLRGILNGIDYERNNPATDKNLVANYSAKK-LKGKVKDKLALQKEFGLPQRKDVPVIAMVSRLTAQKGFQLVVSEMQNLVQFDVQVIVLGTG 332          

HSP 2 Score: 28.1054 bits (61), Expect = 2.248e-25
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            D++ V ND+HT+ IP  LK  Y     Y+S K V
Sbjct:  128 DILHV-NDYHTAFIPFLLKEKYGWINAYQSIKTV 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_EUBE2 (Glycogen synthase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.926e-25
Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDF-GLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLN--SWRY 706
            K    IHN+ +QG +  +    +  LP ++ +S D ++ Y+        N++K GI+ +D V TVS  YA+E+ +    G  LD ++R     + GIVNG+D  E+NP TDK I   Y+  T    K   K ALQ E+GL  D+   +IG + RL +QKG D++A  +     E+VQ +VLGTG++ + +      W+Y
Sbjct:  159 KSIMTIHNLKFQGIWDLKKVKDITGLPDEYFTS-DKLEAYDDA------NYLKGGIVYADRVTTVSETYAEEIKT-PFYGENLDGLMRARSNVLSGIVNGIDYDEYNPETDKRIPNNYNQVTFRKEKWKNKVALQKELGLTEDKGKFMIGLVSRLTDQKGLDLVAYVMDQLCAEDVQFVVLGTGEERYENMFRHYDWKY 349          

HSP 2 Score: 30.4166 bits (67), Expect = 2.926e-25
Identity = 12/28 (42.86%), Postives = 15/28 (53.57%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            NDW T LIP YLK  +     Y+  K +
Sbjct:  134 NDWQTGLIPVYLKERFSQGEFYQGIKSI 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_AZOSE (Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.953e-25
Identity = 65/187 (34.76%), Postives = 109/187 (58.29%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG----KKPWR 682
            +HN+A+QG F  +    L LP +   S + ++ + K      ++++KAG+  +D ++ VSP YA+E+ + E  G  +  ++  R   + GI+NG+D+  WNP TD ++   YDA T+ D  P  K ALQAE+GL  D +  ++G + RL +QKG D++  A+P  +   VQ+ +LG G    ++ WR
Sbjct:  174 VHNLAFQGIFPLDVAERLGLPPESLKS-EGVEYWGK------LSFLKAGLYYADRIVAVSPTYAREIRT-EAHGCGMQGLLETRANRLAGILNGIDMDAWNPRTDPHLDTNYDADTLEDKAPN-KRALQAELGLAADDDALLLGMVTRLTDQKGIDLVLDALPELLARPVQLALLGGGDARFEQAWR 351          

HSP 2 Score: 25.0238 bits (53), Expect = 4.953e-25
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 1
Query:   49 NDWHTSLIPCYLK 87
            NDW T+L P YLK
Sbjct:  149 NDWPTALAPAYLK 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRZJ (Glycogen synthase OS=Streptococcus pneumoniae (strain JJA) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.451e-25
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F    + + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGLERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 22.7126 bits (47), Expect = 6.451e-25
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMY 96
            +D+HT++IP  LK  Y
Sbjct:  132 HDYHTAMIPFLLKEKY 147          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRPJ (Glycogen synthase OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.451e-25
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F    + + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV  ++P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGLERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRADVPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 22.7126 bits (47), Expect = 6.451e-25
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMY 96
            +D+HT++IP  LK  Y
Sbjct:  132 HDYHTAMIPFLLKEKY 147          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRS7 (Glycogen synthase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.451e-25
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR---KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            F IHNIA+QG+F          P      F    G  +    R    +NWMKA +L +D V TVSP YA E +     G  LD ++R     + GIVNG+D   +NP  D ++   + A   +  K   K+ LQ  +GLPV  ++P+IG + RL +QKG  ++   + H ++++VQ+++LGTG   + ++  SW
Sbjct:  160 FTIHNIAFQGQFD---------PGMLGDLFGVGIGRYEDGTLRWHDCLNWMKAAVLYADRVTTVSPSYAHE-IQTPAFGQGLDQVMRMEAGKLSGIVNGIDTDLFNPARDPHLPASFSAED-LSGKAATKQVLQERLGLPVRADVPLIGMVSRLTDQKGFQLVLEELSHILQQDVQLVLLGTGDPDYEAAF-SW 341          

HSP 2 Score: 26.5646 bits (57), Expect = 6.451e-25
Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 135
            D++ V +D+HT++IP  LK  Y     Y++ + VF
Sbjct:  127 DILHV-HDYHTAMIPFLLKEKYHWIQAYQAIRTVF 160          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_MOOTA (Glycogen synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=glgA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 70/192 (36.46%), Postives = 118/192 (61.46%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSWR 703
            + IHN+ YQG F       + L  +F    + ++ Y +      +++MKAGIL +D+V TVS  YA E+ + E  G  LD ++RK    ++GI+NG+D +E++P TD+ + V YDA   ++ K   K ALQ E+ LPV R++PV+G I RL  QKG D+LAA +   +++++Q ++LG+G+  ++   + ++
Sbjct:  162 YTIHNLQYQGTFPRNILKTMALSEEFFVP-ERLEFYGQ------VSYMKAGILYADLVNTVSKKYALEIQTPE-YGERLDGLLRKRAADLRGILNGIDYEEFDPATDRRLAVNYDADH-LEKKGENKAALQREMELPV-RDVPVLGLISRLVSQKGLDLLAAILDPLMQQDLQFVLLGSGEDYYQQLFSRYK 343          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA_LACCB1.727e-2538.02Glycogen synthase OS=Lactobacillus casei (strain B... [more]
GLGA_LACC31.727e-2538.02Glycogen synthase OS=Lactobacillus casei (strain A... [more]
GLGA_DESVM2.247e-2540.98Glycogen synthase OS=Desulfovibrio vulgaris (strai... [more]
GLGA_LACS12.248e-2540.00Glycogen synthase OS=Lactobacillus salivarius subs... [more]
GLGA_EUBE22.926e-2535.18Glycogen synthase OS=Eubacterium eligens (strain A... [more]
GLGA_AZOSE4.953e-2534.76Glycogen synthase OS=Azoarcus sp. (strain EbN1) GN... [more]
GLGA_STRZJ6.451e-2536.32Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRPJ6.451e-2536.32Glycogen synthase OS=Streptococcus pneumoniae (str... [more]
GLGA_STRS76.451e-2534.54Glycogen synthase OS=Streptococcus equi subsp. zoo... [more]
GLGA_MOOTA8.066e-2536.46Glycogen synthase OS=Moorella thermoacetica (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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