FC930002

Overview
NameFC930002
Unique NameFC930002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA1_GEOSL (Glycogen synthase 1 OS=Geobacter sulfurreducens GN=glgA1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.388e-25
Identity = 66/182 (36.26%), Postives = 102/182 (56.04%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPW 679
            +HN+ +QG F      +L +  +    F F+ G  K     + N +K G+  + ++ TVS  YA+E+ + E  G  LD ++R     + GI+NG+D +EWNP TD +I   Y  S  +  K L K  +Q   GLP   ++P+ G +GRL +QKG DILA AI   +  +VQ+++LG G +PW
Sbjct:  173 VHNMQHQGNFYPGAMEVLGIGWEH---FTFL-GLEKD---NQTNLLKGGLYHATVLNTVSEGYAREMQTPE-YGWGLDGVVRARSADLVGILNGVDYEEWNPETDPHIVANYSRSD-LSGKKLCKRDVQRFFGLPERDDVPLFGLVGRLVKQKGIDILAEAIHRILALDVQVVMLGAG-EPW 344          

HSP 2 Score: 33.113 bits (74), Expect = 8.388e-25
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYK 99
            VF A+DWHT+ +P +L T+Y+
Sbjct:  139 VFHAHDWHTAAVPVFLNTLYR 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 73/208 (35.10%), Postives = 107/208 (51.44%), Query Frame = 2
Query:   53 TGILPLSLVT*KLCISPKGCTKVPKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 670
            T ++PL L   K       C +  K    +HN+ YQG F  E   L     Q     D ++ Y        +N++K G+  +D++ TVSP YA+E+++  D G  LD ++RK    + GI+NG+D + WNP  D +I  KY    + D K   KE L A  G+      P+I FIGR+  QKG DI+  A+P+ IK  +  I  GTG+
Sbjct:  155 TALIPLYL---KTLYRECSCFEKTKTVLTVHNLGYQGIFPREKLELTGF-GQEMFHIDGLEFYGM------VNFLKGGLFNADIITTVSPTYAKEILT-PDYGAGLDGVLRKRKENLVGIINGIDYKIWNPEEDPFIAKKYGLQNIND-KQKNKEDLIALAGINSSLQDPIIAFIGRMVYQKGIDIVVDAMPNLIKNGISFIFEGTGE 350          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_STRP4 (Glycogen synthase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.093e-24
Identity = 69/190 (36.32%), Postives = 106/190 (55.79%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFD-FIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            IHN+ +QG+F+    G L     F    + + DG  +      +NWMKAGIL ++ V TVSP YA E+++ +  G  LD I++     + GIVNG+D   +NP TD  +   ++    +  K   K  LQ  VGLPV    P++G + RL  QKG D++  ++ H ++E+VQI++LGTG   +  +  SW
Sbjct:  162 IHNLEFQGQFSEGMLGDL-----FGVGLERYADGTLR--WNNCLNWMKAGILYANRVSTVSPSYAHEIMTSQF-GCNLDQILKMESGKVSGIVNGIDADLYNPQTDALLDYHFNQED-LSGKAKNKAKLQERVGLPVRXXXPLVGIVSRLTRQKGFDVVVESLHHILQEDVQIVLLGTGDPAFEGAF-SW 341          

HSP 2 Score: 24.2534 bits (51), Expect = 1.093e-24
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            +D+HT++IP  LK  Y+    Y+  + V
Sbjct:  132 HDYHTAMIPFLLKEKYRWIQAYEDIETV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLOBA (Glycogen synthase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.093e-24
Identity = 69/186 (37.10%), Postives = 105/186 (56.45%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVR-GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  F IHNIA+QG F       + LP  F   +D+    N  ++    + +MK  I  SDM+ TVS  YA+E+ + E  G  LD ++R+    ++GI+NG+D  E+NP  D  I   YD + + D K   K  LQ+E+GL V+ NIP+I  + RL  QKG D+L       ++ ++Q++++GTG K
Sbjct:  158 KSVFSIHNIAFQGVF-----DPVILPELF--GYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEF-GERLDWLLREKSYMLRGILNGIDYDEFNPKNDNLINKNYDVNNIND-KYENKRNLQSELGLNVNENIPIIAMVTRLTSQKGLDLLVNISERLLQNDIQLVIVGTGDK 334          

HSP 2 Score: 28.4906 bits (62), Expect = 1.093e-24
Identity = 15/30 (50.00%), Postives = 16/30 (53.33%), Query Frame = 1
Query:   49 NDWHTSLIPCYLKTMYKPKGM-YKSAKVVF 135
            NDW T +IP  LK  Y  K M Y   K VF
Sbjct:  132 NDWQTGMIPVLLKLEYMRKDMFYWDIKSVF 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CLOBB (Glycogen synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glgA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.093e-24
Identity = 69/186 (37.10%), Postives = 105/186 (56.45%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVR-GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 673
            K  F IHNIA+QG F       + LP  F   +D+    N  ++    + +MK  I  SDM+ TVS  YA+E+ + E  G  LD ++R+    ++GI+NG+D  E+NP  D  I   YD + + D K   K  LQ+E+GL V+ NIP+I  + RL  QKG D+L       ++ ++Q++++GTG K
Sbjct:  158 KSVFSIHNIAFQGVF-----DPVILPELF--GYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEF-GERLDWLLREKSYMLRGILNGIDYDEFNPKNDSLINKNYDVNNIND-KYENKRNLQSELGLSVNENIPMIAMVTRLTSQKGLDLLVHISERLLQNDIQLVIVGTGDK 334          

HSP 2 Score: 28.8758 bits (63), Expect = 1.093e-24
Identity = 16/34 (47.06%), Postives = 17/34 (50.00%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYLKTMYKPKGM-YKSAKVVF 135
            V   NDW T +IP  LK  Y  K M Y   K VF
Sbjct:  128 VIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSVF 161          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_POLNA (Glycogen synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.347e-24
Identity = 72/184 (39.13%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  134 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLGTG 667
            + IHN+AYQG F  +DF LL LP++                G+ +++MKAG+  +  + TVSP YA E+ + E  G  LD +IR  G  + GI+NG+D   WNP +D  I   Y A  ++D K L K ALQ E+GL VD   PV   + RL  QKG D+L  A+P  +        Q+ V G G
Sbjct:  164 YTIHNLAYQGLFDEDDFHLLGLPSRLMVPVGL------EFHGQ-LSFMKAGLKYAHRITTVSPTYAHEIAT-EAFGCGLDGVIRARGADVSGILNGVDGAVWNPASDPLIAAPYSAD-MLDGKALCKAALQRELGLAVDAGAPVFAVVSRLTSQKGLDLLLDALPALLNFPAAGGPQLAVQGNG 338          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_ANATD (Glycogen synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glgA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.408e-24
Identity = 70/195 (35.90%), Postives = 105/195 (53.85%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNSW 700
            K    IHN+ YQG F  E  + LL+LP ++ S  D +  Y+       I+++K GI+ SD V+TVS  YA E V     G  L  ++   G K  GI+NG+D + +NP TDK I V YD++T  + K   K  LQ  + LPV   I +IG + RL ++KG +++   I   +   VQ+++LG G   +   L  +
Sbjct:  157 KTILTIHNLKYQGIFPKEVMYDLLSLPDEYFSE-DKLKFYDA------ISFLKGGIIYSDKVVTVSRTYANE-VRTLSYGEGLHGLLSGIGEKLIGIINGIDYEVYNPATDKLIFVNYDSNTFENRKKENKFRLQQMLNLPVSDEIVLIGMVSRLTKEKGIELIERIINKLLTLPVQLVILGAGDYHYEQMLKQY 343          

HSP 2 Score: 31.5722 bits (70), Expect = 2.408e-24
Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            D++ V NDWHTS+IP  LK  Y     +   K +
Sbjct:  127 DIIHV-NDWHTSVIPVLLKAHYGHSDKHNKIKTI 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_CALS8 (Glycogen synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=glgA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.408e-24
Identity = 68/186 (36.56%), Postives = 101/186 (54.30%), Query Frame = 2
Query:  125 KLFFCIHNIAYQGRFAFED-FGLLNLPAQF--KSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            K    IHN+ YQG F  E  + LL+LP ++  ++   F D          I+++K GI+ +D V+TVS  YA E+ +    G  L  ++   G K  GIVNG+D +  NP TDK I V YDA+T    K   K  LQ  + LPV  +I +IG + RL ++KG D++   +   +   VQ+++LG G
Sbjct:  157 KTVLTIHNLRYQGVFPKEVMYDLLSLPDEYFDENKLKFYDA---------ISFLKGGIIFADKVVTVSKTYANEIRT-LSHGEGLHGLLSGIGEKLVGIVNGIDYEVCNPATDKLIFVNYDANTFESRKKENKFRLQQMLNLPVSDDIVLIGMVSRLTKEKGIDLIERILSRLLTLPVQLVILGAG 332          

HSP 2 Score: 32.7278 bits (73), Expect = 2.408e-24
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 1
Query:   31 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 132
            D++ V NDWHTS+IP  LK  Y     ++  K V
Sbjct:  127 DIIHV-NDWHTSVIPVLLKAHYSHSPKHQKIKTV 159          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_MARAV (Glycogen synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=glgA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.132e-24
Identity = 69/194 (35.57%), Postives = 110/194 (56.70%), Query Frame = 2
Query:  122 PKLFFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPWRSSLNS 697
            PK  F IHN+AYQG F+ E F  L LP      ++F++ + +      ++++K G++ SD + TVSP YA E+ +    G  LD ++R   + + GI+NG+D ++WNP  D ++   Y A    + K   +  LQ E+GL V    P++GF+GRL EQKG D L   I   ++   Q  +LG+G+  ++ SL +
Sbjct:  161 PKTVFTIHNLAYQGLFSHETFRALGLPDSLWR-YEFLEFHGQ------LSFIKGGLVFSDAITTVSPSYADEIQTPWF-GNGLDGLLRHKSSRLHGILNGIDTRQWNPEADPHLEFHYGADYPAN-KSQCQARLQQELGLEVC-GAPLLGFVGRLVEQKGLDWLLGVIKPLLERGCQFALLGSGEHHYQESLKA 344          

HSP 2 Score: 22.3274 bits (46), Expect = 3.132e-24
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:   49 NDWHTSLIPCYL 84
            NDW ++LIP +L
Sbjct:  143 NDWQSALIPVFL 154          
BLAST of FC930002 vs. ExPASy Swiss-Prot
Match: GLGA_DESVV (Glycogen synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=glgA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.132e-24
Identity = 73/179 (40.78%), Postives = 100/179 (55.87%), Query Frame = 2
Query:  140 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL-PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTG 667
            IHN+A+QGRFA   F    LP Q  S    +DG          N +KAGI  +D V TVSP YA+E++ G   G  LD I+RK    + GI+NG D   W+P  D+++  +Y   T +  K   K AL  E+GL P     P++GFIGRL  QKG D+L   +P  ++ +V +I+LG G
Sbjct:  169 IHNLAFQGRFASRLFETSGLPPQAWS----VDGAEF---WGDFNLLKAGIAYADKVTTVSPSYAREIL-GPAYGSGLDGILRKRAHALHGILNGADYDIWSPGNDRFLPCRY-TPTDLAGKAQCKRALIEELGLDPHLARRPILGFIGRLRGQKGIDLLLDILPRLMESDVGVIILGEG 338          

HSP 2 Score: 23.8682 bits (50), Expect = 3.132e-24
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 1
Query:   37 VFVANDWHTSLIPCYL 84
            V  A+DW T+L+P +L
Sbjct:  135 VLHAHDWQTALVPAFL 150          
The following BLAST results are available for this feature:
BLAST of FC930002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 352
Match NameE-valueIdentityDescription
GLGA1_GEOSL8.388e-2536.26Glycogen synthase 1 OS=Geobacter sulfurreducens GN... [more]
GLGA_THEYD1.053e-2435.10Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_STRP41.093e-2436.32Glycogen synthase OS=Streptococcus pneumoniae sero... [more]
GLGA_CLOBA1.093e-2437.10Glycogen synthase OS=Clostridium botulinum (strain... [more]
GLGA_CLOBB1.093e-2437.10Glycogen synthase OS=Clostridium botulinum (strain... [more]
GLGA_POLNA2.347e-2439.13Glycogen synthase OS=Polaromonas naphthalenivorans... [more]
GLGA_ANATD2.408e-2435.90Glycogen synthase OS=Anaerocellum thermophilum (st... [more]
GLGA_CALS82.408e-2436.56Glycogen synthase OS=Caldicellulosiruptor saccharo... [more]
GLGA_MARAV3.132e-2435.57Glycogen synthase OS=Marinobacter aquaeolei (strai... [more]
GLGA_DESVV3.132e-2440.78Glycogen synthase OS=Desulfovibrio vulgaris subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC34002G02EF PostHarvC1 Citrus clementina cDNA clone C34002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930002 ID=FC930002; Name=FC930002; organism=Citrus clementina; type=EST; length=709bp
CAACAATATTTCTCTGGACCCTATGGTGAAGATGTCGTTTTTGTTGCTAA
TGACTGGCATACTTCCCTTATCCCTTGTTACCTGAAAACTATGTATAAGC
CCAAAGGGATGTACAAAAGTGCCAAAGTTGTTTTTTTGTATCCACAATAT
TGCTTACCAAGGAAGATTTGCATTTGAGGATTTTGGACTTCTCAACCTTC
CAGCTCAATTCAAAAGCTCTTTTGACTTTATTGATGGATACAATAAACCT
GTGAGAGGAAGAAAAATCAACTGGATGAAAGCTGGAATATTAGAATCAGA
CATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCTGGTG
AAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGGCATTAAG
GGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGACTGACAA
ATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCGAAGCCTC
TTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGATAGAAAT
ATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAGGCTCAGA
TATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTTCAGATAA
TAGTCCTTGGTACTGGCAAAAAACCATGGAGAAGCAGCTTGAACAGTTGG
AGATACTGT
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